Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Car13g00092 | ATGGCTAATCCCGCCGTTGTCGTCTGCCTTGTGTCTCTCATCTCAGCAATGTGGACGGCAGATGCTAGAATTCCCGGCGCCTACTCCGGTGGCCCATGGCAGACCGCTCACGCCACCTTCTACGGCGGCTCCGACGCATCCGGCACAATGGGTGGGGCTTGTGGGTATGGGAATTTGTACAGCCAAGGGTACGGGGTGAACACGGCGGCGCTGAGTACGGCGCTATTCAACAATGGGCTGAGCTGTGGCGCGTGTTTCGAGATCAAATGTGCGAATGACCCGAGATGGTGCCATTCGGGTAGCCCGTCGATTGTCATAACGGCCACCAACTTCTGCCCGCCCAACTTTGCTCTGCCCAGTGACAATGGCGGCTGGTGTAACCCTCCTCGCCCCCATTTCGATTTGGCCATGCCTATGTTTCTCAAGATCGCTGAATATCGCGCCGGCATCGTCCCCGTCGCCTTCCGCCGGGTGCCATGCCGGAAGCAAGGGGGGATCCGGTTCACGGTCCACGGGTTCAGGTACTTCAACTTGGTTTTAATCACGAACGTCGCGGGTGCAGGGGATATCGTGAAGGTGAGCGTGAAGGGCACGCGAACCGGGTGGATGAGCATGAGCCGGAACTGGGGTCAAAACTGGCAGTCAAACGCCGTGTTGGTGGGGCAGGCACTGTCATTTAGAGTCACAGGCAGTGACAGACGGACATCCACCACGTACAACGTGGCGCCAGCTGATTGGCAGTTTGGTCAGACGTTCATCGGGAAGAATTTTAGGGTTTGA | 780 | 58.21 | MANPAVVVCLVSLISAMWTADARIPGAYSGGPWQTAHATFYGGSDASGTMGGACGYGNLYSQGYGVNTAALSTALFNNGLSCGACFEIKCANDPRWCHSGSPSIVITATNFCPPNFALPSDNGGWCNPPRPHFDLAMPMFLKIAEYRAGIVPVAFRRVPCRKQGGIRFTVHGFRYFNLVLITNVAGAGDIVKVSVKGTRTGWMSMSRNWGQNWQSNAVLVGQALSFRVTGSDRRTSTTYNVAPADWQFGQTFIGKNFRV | 259 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 13 | 680431 | 682263 | + | Carg20653-RA | Car13g00092 | 159009 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Car13g00092 | 259 | ProSiteProfiles | Expansin, Cellulose-binding-like domain profile. | 175 | 254 | IPR007117 | - | |
| Car13g00092 | 259 | ProSiteProfiles | Expansin, family-45 endoglucanase-like domain profile. | 51 | 165 | IPR007112 | - | |
| Car13g00092 | 259 | Pfam | Lytic transglycolase | 68 | 154 | IPR009009 | - | |
| Car13g00092 | 259 | Pfam | Expansin C-terminal domain | 166 | 243 | IPR007117 | - |
Event-related genes
| Select | Gene_1 | Gene_2 | Event_name |
|---|---|---|---|
| Car13g00092 | Car20g00342 | CCT | |
| Car02g00576 | Car13g00092 | CCT | |
| Car02g00576 | Car13g00092 | ECH | |
| Car13g00092 | Car20g00342 | ECH | |
| Car01g00552 | Car13g00092 | CST |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Car03g00371 | Car-Chr3:4536607 | Car13g00092 | Car-Chr13:680431 | 1.98E-163 | dispersed | |
| Car04g01084 | Car-Chr4:6245571 | Car13g00092 | Car-Chr13:680431 | 2.94E-141 | dispersed | |
| Car04g02553 | Car-Chr4:20180730 | Car13g00092 | Car-Chr13:680431 | 1.55E-136 | dispersed | |
| Car13g00092 | Car-Chr13:680431 | Car04g01707 | Car-Chr4:9792612 | 3.37E-127 | dispersed | |
| Car01g00552 | Car-Chr1:3258039 | Car13g00092 | Car-Chr13:680431 | 0 | wgd | |
| Car13g00092 | Car-Chr13:680431 | Car02g00576 | Car-Chr2:4394601 | 7.06E-168 | wgd | |
| Car13g00092 | Car-Chr13:680431 | Car20g00342 | Car-Chr20:1954549 | 2.59E-169 | wgd | |
| Car13g00092 | Car-Chr13:680431 | Car04g00193 | Car-Chr4:1056885 | 2.85E-169 | wgd | |
| Car13g00092 | Car-Chr13:680431 | Car07g00978 | Car-Chr7:5558020 | 8.31E-164 | wgd |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Car13g00092 | - | - | csv:101206662 | 508.449 |