Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car13g00102 ATGGAGGAAGAAAACGGCGCTCTGATTCAGAGCCTGATTGATGTAGTGAATGAGATTGCTTGGATCTCGGATTTTAGGCATACTGTCAAGAAGCAGTACTGCAATTTGTCCAGGAGATTGAAGCTTTTGATCCCAATGTTTGAAGAGATTAGGGATAGCAAAGAGCCAGTCCCCGAGGATACTCTCAAGGCTCTCGTATTGTTGAAAGAAGCTCTCGAATCGGCTAAGAAGTTGCTCAGATTTGGAAGCGAGGGGAGCAAGATTTTCCTGGCCATAGAGAGGGAGCAAATTATGAACAAATTTCATGAGGTAACCGCTCGGTTGGAACAAGCTTTGGAAGGAATAGCCTACTATAAACTTGATATATCCGATGAAGTTAAAGAGCAGGTCGAGCTTGTTCTTGCTCAGTTCAGAAGAGCCAAAGGCAGGGCCGATGTTCCTGACTCTGAGTTATTGGATGATATCTCTGCCCTTTATAACACGAGCAATGATTCTTCTATAGATCAAGATCGGCTGAGGAGACTGTCCGAAAAATTACAGTTATTAGGAATATCCGATCTTGCACAAGAGTCAATAGCTTTGCATGAGATGGTTACTGCTACTGATGGAGATCCAGGTCAAAGCATTGAGAAGATGGCAGGGCTGCTGAAGAAAATAAAAGATTTCGTGCAAACGGAGAACCTTGAAATGGACGATCCTGGTACAGAAAAGAATTCTCCAGCAAGTTGTAGTGGACAAATATCCAATGAGAAAAATAACAAGGCCCCAATTATACCAGATGATTTTCGCTGCCCCATATCCCTGGAGTTGATGAGAGATCCTGTCATTGTCTCAACTGGACAGACCTATGAACGTTCCTGCATTGAGAAGTGGCTTGAATCCGGGCATGGGACGTGTCCGAAGACACAACAGAAACTTTCAAGCACTACTCTTACACCAAATTATGTGTTGCGTAGCCTTATAGCCCAGTGGTGCGAGGCTAATGGTATCGAACCACCAAAACGACCCAGTAGTGCTCGACCGTGTAGAAGCTCGTCCTCTTGCTCACCTGCTGAACGCACAAAGATTGATATTCTTCTTTGCAAACTTGCATCTGGAAATCCTGAAGATCAACGATCTGCAGCTGGTGAGATCCGACTTCTTGCAAAACGGAACGCAGACAATCGTGTTGCTATAGCTGAGGCTGGTGCAATACCTCTCCTTGTCGGCCTTCTTTCAACTCCCGACTCCCGTGTTCAAGAGCATGCTGTGACAGCACTTCTTAACCTCTCTATATGTGAGGACAACAAGGGAAGCATCATTTCCTCTGGGGCAGTTCCTGGTATTGTTCTCGTTCTCAAGAAGGGGAGCATGGAAGCTCGGGAGAATGCTGCAGCCACTCTTTTCAGCCTTTCAGTGGTGGATGAAAATAAAGTTCGAATCGGTGCCTCCGGAGCTATCCCGCCGCTCGTCACGCTGCTCAGTGAAGGCACACAAAGAGGTAAGAAAGATGCTGCAACTGCTCTTTTCAACTTGTGCATCTACCAAGGAAACAAGGGAAAGGCAGTAAGAGCTGGCGTTGTTCCAACCTTGATGCAGCTTCTCACTGAACCTGGAACAGGAATGGTGGATGAAGCCTTAGCCATCTTAGCAATACTTGCCAGCCATTCCGAAGGGAAAGCTGCCATCGGATCTGCAAAGGCGGTACCAGTTTTGGTCGATGTTATCGGTACAGGATCACCGAGGAACAGAGAGAATGCAGCTGCAGTTCTCGTGCACCTTTGCTCAGGAGACGAGCAACACCTAGTAGAGGCCAGAGATCTTGGAGTGATAAGTTCATTGATAGATTTGGCACGCAGTGGCACTGACAGAGGAAAGCGAAAAGCTGCTCAGTTGCTTGAGCGAATGAACCGACTCTTCGAGCACGCAGCGCACCCGGAGGAGATTCGAGTGCTTCGGTTGCAAGCACCGGAGTCTCGACCTCAAAACCAGGCATCACAATCAACCTCCACCACGGAAGTCGTCGGTAGCTGA 2013 47.49 MEEENGALIQSLIDVVNEIAWISDFRHTVKKQYCNLSRRLKLLIPMFEEIRDSKEPVPEDTLKALVLLKEALESAKKLLRFGSEGSKIFLAIEREQIMNKFHEVTARLEQALEGIAYYKLDISDEVKEQVELVLAQFRRAKGRADVPDSELLDDISALYNTSNDSSIDQDRLRRLSEKLQLLGISDLAQESIALHEMVTATDGDPGQSIEKMAGLLKKIKDFVQTENLEMDDPGTEKNSPASCSGQISNEKNNKAPIIPDDFRCPISLELMRDPVIVSTGQTYERSCIEKWLESGHGTCPKTQQKLSSTTLTPNYVLRSLIAQWCEANGIEPPKRPSSARPCRSSSSCSPAERTKIDILLCKLASGNPEDQRSAAGEIRLLAKRNADNRVAIAEAGAIPLLVGLLSTPDSRVQEHAVTALLNLSICEDNKGSIISSGAVPGIVLVLKKGSMEARENAAATLFSLSVVDENKVRIGASGAIPPLVTLLSEGTQRGKKDAATALFNLCIYQGNKGKAVRAGVVPTLMQLLTEPGTGMVDEALAILAILASHSEGKAAIGSAKAVPVLVDVIGTGSPRNRENAAAVLVHLCSGDEQHLVEARDLGVISSLIDLARSGTDRGKRKAAQLLERMNRLFEHAAHPEEIRVLRLQAPESRPQNQASQSTSTTEVVGS 670
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 732289 736948 + Carg20663-RA Car13g00102 159019
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car13g00102 670 MobiDBLite consensus disorder prediction 237 253 - -
Car13g00102 670 Pfam Armadillo/beta-catenin-like repeat 550 589 IPR000225 GO:0005515
Car13g00102 670 Pfam Armadillo/beta-catenin-like repeat 385 424 IPR000225 GO:0005515
Car13g00102 670 Pfam Armadillo/beta-catenin-like repeat 468 506 IPR000225 GO:0005515
Car13g00102 670 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 396 438 IPR000225 GO:0005515
Car13g00102 670 MobiDBLite consensus disorder prediction 650 670 - -
Car13g00102 670 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 519 561 IPR000225 GO:0005515
Car13g00102 670 Pfam U-box domain 258 328 IPR003613 GO:0004842|GO:0016567
Car13g00102 670 ProSiteProfiles U-box domain profile. 257 331 IPR003613 GO:0004842|GO:0016567
Car13g00102 670 MobiDBLite consensus disorder prediction 648 670 - -
Car13g00102 670 MobiDBLite consensus disorder prediction 229 254 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Car13g00102 Car20g00358 CCT
Car01g00541 Car13g00102 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car03g00452 Car-Chr3:4961677 Car13g00102 Car-Chr13:732289 4.92E-60 dispersed
Car04g00936 Car-Chr4:5378929 Car13g00102 Car-Chr13:732289 1.49E-166 dispersed
Car04g01459 Car-Chr4:8467132 Car13g00102 Car-Chr13:732289 0 dispersed
Car04g02783 Car-Chr4:21325819 Car13g00102 Car-Chr13:732289 1.31E-123 dispersed
Car07g00243 Car-Chr7:1326806 Car13g00102 Car-Chr13:732289 1.00E-59 dispersed
Car13g00102 Car-Chr13:732289 Car18g00828 Car-Chr18:9305016 0 dispersed
Car18g00408 Car-Chr18:2545138 Car13g00102 Car-Chr13:732289 2.70E-98 dispersed
Car01g00541 Car-Chr1:3209827 Car13g00102 Car-Chr13:732289 0 wgd
Car13g00102 Car-Chr13:732289 Car02g00586 Car-Chr2:4455461 2.32E-18 wgd
Car13g00102 Car-Chr13:732289 Car20g00358 Car-Chr20:2013808 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car13g00102 - - csv:101218572 1121.69