Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car13g00103 ATGGATTTCTCCTCTCTTCCACTCTTTTTAGATCCTCCTCCCAATTGCCTTCAGCCATCCAATCATGTCGGTGGCGGTGGAGTTAGCTCGATTCGACGTGGTTCCATGGCCGACCGAGCTCGGTTGGCTAACGTACCTCTACCGGAGATGGCGCTCAAGTGTCCTAGATGTGATTCAACCAACACCAAATTTTGTTACTTTAATAACTATAGTCTCTCTCAACCGCGCCATTTCTGTAAGGCTTGTCGCCGATATTGGACTCGTGGTGGTGCGCTTCGGAACGTCCCGGTTGGAGGCGGTTGTCGTCGGAATAAGAAGATTAAAACTCGACGCTCGAAGTCTCCGGTGGCTCGGAATGAAACTCAGCTGAATGTTATTGGTGATTTACAGCCTCAAAATCCTCCCCTTTCATTCATGGCTTCATTCAACAATATTCCTCAATATGGAACAATGAATTTAGGGTTGAATTTCAATGATATTGGAAACGATGCTCTTCAGAATCATCAATGGCGCAGTGTCATGAACTGTCCGATCTCAGGTGGCTTAGAAACCCCAACGGGATGGTACCCAACAAATTCAATCCCAACACCAAATTCAAGAGCGACCCAGTTGCCTTTAGGGAAGATTGAAGATAACCCAAGTGCTGAATTTGGTGAAATCCTCAAATTTGGGTATCAATAA 681 45.96 MDFSSLPLFLDPPPNCLQPSNHVGGGGVSSIRRGSMADRARLANVPLPEMALKCPRCDSTNTKFCYFNNYSLSQPRHFCKACRRYWTRGGALRNVPVGGGCRRNKKIKTRRSKSPVARNETQLNVIGDLQPQNPPLSFMASFNNIPQYGTMNLGLNFNDIGNDALQNHQWRSVMNCPISGGLETPTGWYPTNSIPTPNSRATQLPLGKIEDNPSAEFGEILKFGYQ 226
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 742863 743818 + Carg20664-RA Car13g00103 159020
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car13g00103 226 Pfam Dof domain, zinc finger 51 106 IPR003851 GO:0003677|GO:0006355
Car13g00103 226 ProSitePatterns Zinc finger Dof-type signature. 54 90 IPR003851 GO:0003677|GO:0006355
Car13g00103 226 ProSiteProfiles Zinc finger Dof-type profile. 52 106 IPR003851 GO:0003677|GO:0006355
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Car02g00587 Car13g00103 CCT
Car02g00587 Car13g00103 ECH
Car01g00540 Car13g00103 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car03g00379 Car-Chr3:4584565 Car13g00103 Car-Chr13:742863 1.24E-45 dispersed
Car07g00198 Car-Chr7:1116298 Car13g00103 Car-Chr13:742863 8.64E-37 dispersed
Car13g00103 Car-Chr13:742863 Car14g00128 Car-Chr14:617199 1.11E-52 dispersed
Car01g00540 Car-Chr1:3203824 Car13g00103 Car-Chr13:742863 9.88E-102 wgd
Car13g00103 Car-Chr13:742863 Car02g00587 Car-Chr2:4460372 2.27E-48 wgd
Car13g00103 Car-Chr13:742863 Car20g00359 Car-Chr20:2020738 4.87E-48 wgd
Car13g00103 Car-Chr13:742863 Car04g00201 Car-Chr4:1109912 4.54E-46 wgd
Car13g00103 Car-Chr13:742863 Car06g00263 Car-Chr6:1493595 9.12E-51 wgd
Car13g00103 Car-Chr13:742863 Car07g00965 Car-Chr7:5466298 8.86E-32 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
4505 PF02701 zf-Dof 2.80E-33 No_clan Car TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car13g00103 - - cmax:111469505 458.373