Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Car13g00164 | AATTTTGCTTCACAACCAATCCCATATCTCTGTCTTCTTTCTCTCTCTACTGAGTCTAAAATGGACGCAAAATCCAGCCCAACTTCAACCATCTTCCGTTCTCAGTCGCCGTCGTCGTCCCCATTACCGCCGCCGCAGAGTGTTCAGGCCGGCTTGGTGGCCAGTCCGTGTGCTGCGTGCAAGACTCTGAGGCGGAGATGCACAGAGAAATGCGTATTGGCGCCCTATTTCCCTCCCTCTGATCCTCTCAAGTTTACCATTGCTCACCGTATCTTCGGCGCTAGCAACATCATCAAATTGCTTCAGGATCTTCCTGAATCACAGAGAATTGATGCAGTGAGTAGCTTGGTATACGAAGCAAGCGCAAGAATCAGAGATCCAGTATATGGATGTGCAGGGGCCATTTCCCAGCTCCAAAAACAAATAAACGAACTGCAAGCAGAGCTAGCCAAAACACAGGCTGAGCTTCTCAACATCCACAGCCACCAAACAAATTTGGTGGCTCTAATTTGCAAGGAACTAGCTCAAACACCGCCACCGGTGTCGCCCCTGGACCACCACACACTCGACAACAATCTCAACACTGCCACTCCTCAGAGCTACACAAATTTGTTTGAAGATAGCAGCATTTGGGAGCCTCTTTGGACATGA | 651 | 49.46 | NFASQPIPYLCLLSLSTESKMDAKSSPTSTIFRSQSPSSSPLPPPQSVQAGLVASPCAACKTLRRRCTEKCVLAPYFPPSDPLKFTIAHRIFGASNIIKLLQDLPESQRIDAVSSLVYEASARIRDPVYGCAGAISQLQKQINELQAELAKTQAELLNIHSHQTNLVALICKELAQTPPPVSPLDHHTLDNNLNTATPQSYTNLFEDSSIWEPLWT | 216 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 13 | 1477601 | 1478911 | - | Carg21071-RA | Car13g00164 | 159081 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Car13g00164 | 216 | Pfam | Lateral organ boundaries (LOB) domain | 56 | 153 | IPR004883 | - | |
| Car13g00164 | 216 | MobiDBLite | consensus disorder prediction | 24 | 47 | - | - | |
| Car13g00164 | 216 | Coils | Coil | 135 | 162 | - | - | |
| Car13g00164 | 216 | ProSiteProfiles | LOB domain profile. | 55 | 156 | IPR004883 | - |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Car11g01652 | Car-Chr11:12991308 | Car13g00164 | Car-Chr13:1477601 | 6.74E-50 | dispersed | |
| Car13g00164 | Car-Chr13:1477601 | Car15g00405 | Car-Chr15:2108674 | 5.37E-60 | dispersed | |
| Car01g00485 | Car-Chr1:2847884 | Car13g00164 | Car-Chr13:1477601 | 1.64E-98 | wgd | |
| Car13g00164 | Car-Chr13:1477601 | Car02g00632 | Car-Chr2:4759375 | 1.50E-71 | wgd | |
| Car13g00164 | Car-Chr13:1477601 | Car20g00407 | Car-Chr20:2301707 | 1.75E-72 | wgd | |
| Car13g00164 | Car-Chr13:1477601 | Car04g00252 | Car-Chr4:1433576 | 1.11E-70 | wgd |
Transcription factors information
| Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
|---|---|---|---|---|---|---|---|
| 4508 | PF03195 | LOB | 1.70E-40 | No_clan | Car | TF |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Car13g00164 | - | - | csv:101222262 | 298.13 |