Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car13g00181 ATGGAACATAGTTATGGATTTGAACATGTCGCTCAACAAAGCCGGCGTGATAAGCTAAGAGTATCAAGAAACTCTGATGAACAATTGAGTTTTCAAAACTCAGGGCATTCTGGTTTGGATCTAGATCTTGTTAGAATTCAAAATTTTAACAAGAATTCGATTTTGCCTTCAGTTATGATCAATTTCTCTAGAGATTCGGACATAATGTTGAGCCAAGAACTTGTGGGAGATGCTTCGTTGGGTTCTGTTTCCAATTATTGGAAAACTTCTGATTGGGAGATGAACTGTGGAAATAATTGTTTGGGAGGTGAAATGTTGAATGATTCCACAGTTTATACACTTCAAGATGTTGTTAACCAAACTGCTGCTCGTGAAGGCCGTGGAAATGAGCCAAACGTGTTGCCTTATGACACTACTGGTTTTGTGAGTGATTCCAATCCACAACGTCTAGCGCTGTCTCTGTCTTCTAATACACAGTTTCAAGAATCAGAGGAATCCAAAACAGTCAAATCTGAAACTATTGGTAACAAAAGTTATGGGAAATCTCTTCAAAATATGATGGGAGTTTCTGTGAATCCATATAGAAACACTGGTCCTCTTGGTCCCTTTACTGGGTATGCCACCATTTTAAAGAGTTCCAAATTCTTAAAGCCTGCTCAACTTTTGTTAGACGAATTTTGTAGCTCAAATGCTCATAAATTTGTCCAACCATGTGAGGCCTCACCTGCCCTTAATGCAGATGATGAAACAAATATTAGTGGCGTTGGGAGCATTTCCTCTGAATCTCATCAACCGGAGTATCAGCAAAAGAAGGCAAAACTTCTATATATGCTCGACGAGCAAATGCAAATGGTAGTGTCAGCGTTTGAATCAGTAGCTGGTCTTAGTTCTGCGACGCCTTACATTTCTCTGGCGCTTAAGACAGTGTCAAGACACTTCCAGTCTCTAAAGAATGCCATCTCCGAACAATTGAAGTATCTGAGGAAGGTAGTTGGTGAGGATTCGTCGTCCATCTCTGCTGGGACAAGCGGTAGGAAATACATTGAACAGAGCTTCCAAAAGCAAAAAACTGGCATTGTTAATATCGGATTCCTCGAATCCCAAAATGTTTGGAGGCCGCAGAGGGGCTTGCCTGAACGTGCTGTTGCAATTCTTAGAGCCTGGCTCTTTGAGCATTTTCTTCACCCGTACCCCACGGACACAGATAAACACATGTTGGCCACTCAAACAGGCTTATCCCGAAACCAGGTGTCGAATTGGTTCATAAATGCACGAGTGCGGGTGTGGAAGCCAATGGTAGAAGAGATACACATGCTAGAAACCAAGGGCATGGCAGAAATGAACACCAAAGGCCAAGTAACAATAGAAAACACACCCGGTTGGACCAGTAGTGAACAACAGCCTCTAAAAAGCCATGGTGCTGTGAATGAAATTATTACTAGTCAGTGGGATCAAGGCAAACCATCCAAATTGGACAATGGGGTTCAGTCCAACACGGAAGGAGAACTGATGGGGTTCGTGCCATATCGAGCCAGCACAGTCGACATCGGAAGAGTCGGAGCTGTCTCTCTAACATTAGGCCTTCGCCACCGAGTCGAGAGCGCTCACCATCAACAGCAGCAACAAGATGAGCAACTACTACGCCATTATGGAAGTGAAATGATCCATGATTTTGTGGGGTAA 1683 43.14 MEHSYGFEHVAQQSRRDKLRVSRNSDEQLSFQNSGHSGLDLDLVRIQNFNKNSILPSVMINFSRDSDIMLSQELVGDASLGSVSNYWKTSDWEMNCGNNCLGGEMLNDSTVYTLQDVVNQTAAREGRGNEPNVLPYDTTGFVSDSNPQRLALSLSSNTQFQESEESKTVKSETIGNKSYGKSLQNMMGVSVNPYRNTGPLGPFTGYATILKSSKFLKPAQLLLDEFCSSNAHKFVQPCEASPALNADDETNISGVGSISSESHQPEYQQKKAKLLYMLDEQMQMVVSAFESVAGLSSATPYISLALKTVSRHFQSLKNAISEQLKYLRKVVGEDSSSISAGTSGRKYIEQSFQKQKTGIVNIGFLESQNVWRPQRGLPERAVAILRAWLFEHFLHPYPTDTDKHMLATQTGLSRNQVSNWFINARVRVWKPMVEEIHMLETKGMAEMNTKGQVTIENTPGWTSSEQQPLKSHGAVNEIITSQWDQGKPSKLDNGVQSNTEGELMGFVPYRASTVDIGRVGAVSLTLGLRHRVESAHHQQQQQDEQLLRHYGSEMIHDFVG 560
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 2110060 2112897 + Carg26242-RA Car13g00181 159098
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car13g00181 560 Pfam Homeobox KN domain 388 427 IPR008422 GO:0003677|GO:0006355
Car13g00181 560 Pfam Associated with HOX 209 321 IPR006563 -
Car13g00181 560 ProSiteProfiles 'Homeobox' domain profile. 368 431 IPR001356 GO:0003677
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Car01g00458 Car13g00181 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car07g01000 Car-Chr7:5698858 Car13g00181 Car-Chr13:2110060 7.04E-69 dispersed
Car13g00181 Car-Chr13:2110060 Car14g00087 Car-Chr14:459051 5.35E-70 dispersed
Car01g00458 Car-Chr1:2663523 Car13g00181 Car-Chr13:2110060 1.84E-34 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
4510 PF07526 POX 1.70E-27 No_clan Car TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car13g00181 - - cmax:111469309 1058.51