Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car13g00196 ATGCCTTTCTCTTCTGATTTCCATTCAACTTCCCTCCTTTACAACCTCTCAATTTTGAAGGACAAGCTCCACCAAATCCAATCCGTTGTCTCCGTCGTCGTCTACGACTTTCAAAACTCGACCGAGTCCCTCCCTCGAGACTTGTCGCAGTTATCGACGGTCAACTCTTTGATCCAGGAACTCATCATGGCTGCTTCTTCCATGTTGTTCACATGTCAAGAGATGAATAACTTCGCTGTGAACTCGTCGTTACATAACGATGTTGTCGATAATAATCTCCATGCAACACAAGATTATCGAACTTCAATCGATATCGTTGAGCTAGACGCAACAGATCTTCTTGCAAAATACACCCATTACTGCCAAATTTGCGGGAAAGGGTTCAAGCGGGACGCGAACCTACGAATGCACATGCGAGCACACGGGGACGAGTACAAAGCGAGCGGGGCGTTGAGTAACCCGGAGAAGAGTCATAGAAGGGATATGAACATAAACAAGAAATTAGGGACCAAATACTCATGTCCACAAGAGGGCTGCAGATGGAACCAAAAACATGCCAAGTTTCAGCCATTGAAATCACTGATTTGTGTGAAAAATCATTACAAGAGAACTCATTGCCCCAAAATGTATGTGTGCAAGCTCTGCAGTGGCAAGAAATTTTCAGTGCTATCAGATTTGAGGACTCATGAGAAACATTGTGGAGACATGAAATGGGTTTGTTCTTGTGGCACCACATTTTACAGGAAAGATAAGCTCATGGGTCATGTCGCTCTGTTTGTCGGGCATGCCCCGGTGATCAGTTCGTCGGTAAGAGCCTAG 819 45.18 MPFSSDFHSTSLLYNLSILKDKLHQIQSVVSVVVYDFQNSTESLPRDLSQLSTVNSLIQELIMAASSMLFTCQEMNNFAVNSSLHNDVVDNNLHATQDYRTSIDIVELDATDLLAKYTHYCQICGKGFKRDANLRMHMRAHGDEYKASGALSNPEKSHRRDMNINKKLGTKYSCPQEGCRWNQKHAKFQPLKSLICVKNHYKRTHCPKMYVCKLCSGKKFSVLSDLRTHEKHCGDMKWVCSCGTTFYRKDKLMGHVALFVGHAPVISSSVRA 272
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 2240416 2241508 + Carg23705-RA Car13g00196 159113
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car13g00196 272 ProSiteProfiles Zinc finger C2H2 type domain profile. 119 146 IPR013087 -
Car13g00196 272 Pfam Zinc finger, C2H2 type 119 141 IPR013087 -
Car13g00196 272 ProSitePatterns Zinc finger C2H2 type domain signature. 121 141 IPR013087 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car12g00907 Car-Chr12:9003008 Car13g00196 Car-Chr13:2240416 8.44E-74 dispersed
Car13g00196 Car-Chr13:2240416 Car04g01957 Car-Chr4:13407527 4.44E-26 dispersed
Car13g00196 Car-Chr13:2240416 Car07g00486 Car-Chr7:2426305 1.47E-73 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
4511 PF00096 zf-C2H2 6.40E-05 CL0361 Car TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car13g00196 - - cmos:111464900 518.079