Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car13g00200 ATGGGTCAGATCCAGTACTCTGAGAAATACTTTGATGATATCTATGAGTACAGGCATGTCGTGCTTACTCCTGATGTGGCCAAACTTCTGCCCAAGAATCGCCTTCTTTCTGAGAATGAATGGCGAGCGATTGGGGTTCAGCAGAGCCGTGGATGGGTGCATTATGCAATTCACCGCCCAGAGCCGCACATAATGCTGTTCAGGAGGCCACTCAACTATCAACAGCAGCAAGAGAATCAAGCTCAGCAGCAGATTCTAGCCAAGTGA 267 48.69 MGQIQYSEKYFDDIYEYRHVVLTPDVAKLLPKNRLLSENEWRAIGVQQSRGWVHYAIHRPEPHIMLFRRPLNYQQQQENQAQQQILAK 88
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 2257626 2258893 - Carg23701-RA Car13g00200 159117
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car13g00200 88 PANTHER CYCLIN-DEPENDENT KINASES REGULATORY SUBUNIT/60S RIBOSOME SUBUNIT BIOGENESIS PROTEIN NIP7 1 86 - -
Car13g00200 88 SUPERFAMILY Cell cycle regulatory proteins 1 83 IPR036858 GO:0016538
Car13g00200 88 PANTHER CYCLIN-DEPENDENT KINASES REGULATORY SUBUNIT 1 86 - -
Car13g00200 88 Gene3D - 1 84 IPR036858 GO:0016538
Car13g00200 88 PRINTS Cyclin-dependent kinase regulatory subunit signature 3 17 IPR000789 GO:0016538
Car13g00200 88 PRINTS Cyclin-dependent kinase regulatory subunit signature 18 32 IPR000789 GO:0016538
Car13g00200 88 PRINTS Cyclin-dependent kinase regulatory subunit signature 40 54 IPR000789 GO:0016538
Car13g00200 88 PRINTS Cyclin-dependent kinase regulatory subunit signature 55 69 IPR000789 GO:0016538
Car13g00200 88 Pfam Cyclin-dependent kinase regulatory subunit 4 70 IPR000789 GO:0016538
Car13g00200 88 SMART CKS_2 3 72 IPR000789 GO:0016538
Car13g00200 88 ProSitePatterns Cyclin-dependent kinases regulatory subunits signature 1. 6 24 IPR000789 GO:0016538
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Car13g00200 Car20g00470 CCT
Car02g01152 Car13g00200 CCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car13g00200 Car-Chr13:2257626 Car20g00470 Car-Chr20:2605637 1.56E-49 dispersed
Car13g00200 Car-Chr13:2257626 Car02g01152 Car-Chr2:7913276 4.21E-51 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car13g00200 K02219 - csv:101204120 159.458