Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car13g00206 ATGTCTAGTGGGCGCGGTGGTCGTGGTCGTGGTGCCGGAGGTCGTGGAGGGCAGTCGTCTCCGGCAATTTCTCGCGGTGGTGGTGGTAGAAGTGGCGGAGGGAGAGGTGGTCAAGGCGGTGGAGGAAGAGGTGGTCAAGGCGGTGGGGGAAGAGGTGGTCGAGGCGGCGGTGGGAGAGATGGAGGTCGGGTGGATCATCCGGCTACACAGCAGTTTCCTTCTCCGACTCCTCAGCCTACTCCGGTTGCTTCCCGTCCTCCACTCGAGACTTCTGCGGGAGCATCTTCTTCATCTTCTACAACTGCTGCTCTTTCACAGCCGGAGGCTTCTTCTTCGAGGATCGAGGCACAGTTGGAGAAGACATTGGTACTGCAGAATGTTCCGCCGTCTTCATCTAAGGCTATGACTGTGGCTAAGAGACCGGGATATGGAACCATTGGGCGCAAAGTTGTTGTTCGGGCTAATCATTTTCTGGTACAAGTTGAAGATAAAGATCTCTACCATTACGATGTTTCTATTACACCTGAGGTTACATCCAAAAAGGTCTGCCGAGACATAATACACCAGCTTGCAAAAATGTACAAAGAATCTCATTTAGGTGGAAGATTTCTAGCATATGATGGTGGGAAAAGTGTTTATGTTGCTGGTGAACTTCCATTTGTGTCCAAAGAGTTTCTTATTAAATTAGTCCGTAATGATGATGCCGGGTCTTCTCAACCAAGAAGGAAAGAACGTGAATTCAAAGTAACTATCAAATTTGCTTCCAAGCCAGACCTCAATCATCTACGACAGTTTTTACATGGACGGCAGCGAGATGCTCCTCAAGAAACTATTCAAGTTCTTGATGTAGTTCTGAGAACTACACCATCTATCCATTGCACAGTTGTTGGAAGGTCATTTTTCTCAACCGAGTTCGGAAAACCAGGTGAACTTGGTAATGGTGTTGAGTATTGGAGAGGATATTATCAAAGTCTGCGACCTGTACAAATGGGTCTATCTTTAAATATAGGTAACTCTTTGTTACTATCAATTGACTCTGTCACTGCTGCTCTTTTTAACGTTCATGAGTTCTGTACTGCAGATGTGTCAGCCAGATCATTTTATGAACCAATATATGTGACAGATTATATTGCTAAACATTTCAATTTGAGGAATTTGCGAACAGCAACTGATCAGGATTTCCGGAAGATAAAAAAAGTACTTAGGGGTGTGAAGGTGGCATTAATGTGTGGGGAGCATGCCAGGACGTACAAAATTACTGGGATATCATCAGAGCCTGTAGACAGATTAATGTTTACTCTTGATAATCAGAGTACCCGAATCTCTGTTAGTCAATACTTTCTTGAAAAATATGGTGTTAAGCTCAGGTCAGCATTTCTACCTGCTATTCAAGCTGGTAATGATGCAAAGCCCATCTATTTGCCTATGGAGCTTTGTAGAATTGTTAACGGGCAGAGATATACCAAAAAGTTGAATGAACGGCAAGTAACTGAGCTGTTAAGAGCGACTTGTCAGAGACCTGAGAATAGGGAATGGAGTATAAAGACGATGGTTGAAGGGAATAGGTATAATACTGATGACATTGTTAAGGATTTTGGCATTGAAGTTAGATCAGAGTTATGTAATGTTGATGCTCGTGTTTTGCCATCCCCATCGCTCAGTTATCATGAAACAGGTGGAGAATCAAGGGTTGATCCACGGATGGGTCAGTGGAATATGATTAATAAGAAAATGATCAATGGTGGTACAGTAGAACATTGGGCATGTGTGACTTTCTCCTCACGGTTGGATAAAGATTTGCCATCTGAATTTTGCAAGCAGTTGGTTAACATGTGCAGAAGCAAAGGAATTGCTTTTGCCCTTGCTCCGTTGTTTCCCATACGTGCTGCACATCCAAATCAAATTGACACTACGCTTAGAGGTATTCATAAGGACTCTGTAAACATTTTGGGACCCAAGGGCAAGTCTCTTCAGCTACTCATAATTATTTTACCTGATCTTACTGGTTCTTATGGGAAGATTAAAAGGATTTGCGAGACAGAACTCGGAATTGTTTCACAATGTTGCCAGCCTAGGCAGGCACAGAAGCTAAACAAGCAATATTTTGAAAATGTGGCTCTTAAAATCAACGTTAAGGTTGGGGGAAGAAACAATGTCCTAACTGATGCTATTCTTCGGAAAATTCCTGTTGTCTCGGAGAAGCCTACAATAATCTTTGGAGCAGATGTCACGCACCCGCAACCTGGAGAGGACTCTAGTCCTTCAATAGCAGCTGTTGTCGCCTCCATGGACTGGCCCGAGGTAACGAAGTATAGGGGTATTGTTTCAGCCCAAGCTCATCGTGAAGAAATTATACAAGATTTGTACAAACAATTTGAAGATCCTCAAAGAGGGTTGGTGCATGCAGGGATGATTAGGGAGCTTTTCATTGCATTTAGAAGGTCAACGAATTTGAAACCGCACAGAATAATATTCTACAGAGATGGTGTAAGTGAAGGACAATTCTCTCAAGTTCTACTTTATGAGATGGATGCAATCAGGAAGGCATGTGCCTCCCTTGAAGCGGATTACCAACCTCCGGTTACCTTTATAGTCGTGCAAAAGAGGCATCATACTCGTCTTTTCCCCACCAGTCGCGATACTGATCGGAGTGGAAACATCCTTCCGGGTACTGTTGTTGATACCAAAATTTGTCATCCAACTGAGTTTGATTTCTATTTAAACAGCCATGCTGGCATACAGGGAACGAGTAGACCGACACATTATCACGTTCTATTCGACGAAAACAATTTCAGTGCAGATGCGATGCAAATGCTTACCAATAATCTATGCTACACGTATGCAAGGTGCACACGGTCTGTTTCCATTGTTCCCCCAGCATACTATGCCCATCTAGCAGCTTTTCGAGCTCGTCACTACATGGAGGGTGATGCATCCGATAGCGGTTCCACGGGTTTGGGCGGCGGGATTGTTCAGGTTCAGCGGATGCCGAACGTAAGGGAGAATGTGAAGGATGTTATGTTTTACTGCTGA 3033 44.08 MSSGRGGRGRGAGGRGGQSSPAISRGGGGRSGGGRGGQGGGGRGGQGGGGRGGRGGGGRDGGRVDHPATQQFPSPTPQPTPVASRPPLETSAGASSSSSTTAALSQPEASSSRIEAQLEKTLVLQNVPPSSSKAMTVAKRPGYGTIGRKVVVRANHFLVQVEDKDLYHYDVSITPEVTSKKVCRDIIHQLAKMYKESHLGGRFLAYDGGKSVYVAGELPFVSKEFLIKLVRNDDAGSSQPRRKEREFKVTIKFASKPDLNHLRQFLHGRQRDAPQETIQVLDVVLRTTPSIHCTVVGRSFFSTEFGKPGELGNGVEYWRGYYQSLRPVQMGLSLNIGNSLLLSIDSVTAALFNVHEFCTADVSARSFYEPIYVTDYIAKHFNLRNLRTATDQDFRKIKKVLRGVKVALMCGEHARTYKITGISSEPVDRLMFTLDNQSTRISVSQYFLEKYGVKLRSAFLPAIQAGNDAKPIYLPMELCRIVNGQRYTKKLNERQVTELLRATCQRPENREWSIKTMVEGNRYNTDDIVKDFGIEVRSELCNVDARVLPSPSLSYHETGGESRVDPRMGQWNMINKKMINGGTVEHWACVTFSSRLDKDLPSEFCKQLVNMCRSKGIAFALAPLFPIRAAHPNQIDTTLRGIHKDSVNILGPKGKSLQLLIIILPDLTGSYGKIKRICETELGIVSQCCQPRQAQKLNKQYFENVALKINVKVGGRNNVLTDAILRKIPVVSEKPTIIFGADVTHPQPGEDSSPSIAAVVASMDWPEVTKYRGIVSAQAHREEIIQDLYKQFEDPQRGLVHAGMIRELFIAFRRSTNLKPHRIIFYRDGVSEGQFSQVLLYEMDAIRKACASLEADYQPPVTFIVVQKRHHTRLFPTSRDTDRSGNILPGTVVDTKICHPTEFDFYLNSHAGIQGTSRPTHYHVLFDENNFSADAMQMLTNNLCYTYARCTRSVSIVPPAYYAHLAAFRARHYMEGDASDSGSTGLGGGIVQVQRMPNVRENVKDVMFYC 1010
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 2304489 2311107 - Carg23695-RA Car13g00206 159123
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car13g00206 1010 Pfam N-terminal domain of argonaute 148 285 IPR032474 -
Car13g00206 1010 Pfam Argonaute linker 2 domain 510 555 IPR032472 -
Car13g00206 1010 Pfam PAZ domain 386 499 IPR003100 GO:0005515
Car13g00206 1010 MobiDBLite consensus disorder prediction 89 112 - -
Car13g00206 1010 MobiDBLite consensus disorder prediction 1 112 - -
Car13g00206 1010 Pfam Mid domain of argonaute 566 644 IPR032473 -
Car13g00206 1010 Pfam Piwi domain 661 974 IPR003165 GO:0003676
Car13g00206 1010 ProSiteProfiles Piwi domain profile. 659 975 IPR003165 GO:0003676
Car13g00206 1010 ProSiteProfiles PAZ domain profile. 411 483 IPR003100 GO:0005515
Car13g00206 1010 Pfam Argonaute linker 1 domain 296 336 IPR014811 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car11g00458 Car-Chr11:2527407 Car13g00206 Car-Chr13:2304489 1.69E-163 dispersed
Car13g00206 Car-Chr13:2304489 Car14g01580 Car-Chr14:12873168 0 dispersed
Car20g00011 Car-Chr20:58453 Car13g00206 Car-Chr13:2304489 5.05E-145 dispersed
Car13g00206 Car-Chr13:2304489 Car06g01179 Car-Chr6:8661963 0 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car13g00206 K11593 - csv:116403995 1494.56