Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car13g00231 ATGGCGAATCTCTCGTCTTTCATAAATCCAGAAGGGTCAAGCTTTGATTTTGAAGAGCTCGAAGAAGCCATAGTTTTACAGAGAGTTGAGCTTCAAAACGACGAACTCCAATCTTCACAGCCATCGTCAAACCAGAATCAATCACAGAGAAAAGGAGCAAATTCAACGTCACAGAGGCAGCTTGATGCCAAGACACTGAGACGATTGGCTCAAAACAGAGTAGCTGCAAAAAAAAGCCGTCTGAGGAAGAAGACTTATATTCAGCAGCTAGAGTCCAGTAGAATCAAGCTCTCTCAGCTTGAACAAGACCTCCATAGAGCACGTTCTGAGGGATTGTTTCTAGGTGCTTGTGGTGGCGTTATGGGTGGCAATATCAGCTCCGGAGCTGCAATATTTGACATGGAGTATGCGCGGTGGCTAGACAACGACCTCCGTATGATGTCGGAGTTGCGGGCGGCAGTGGAGGGGCATCTCCCGGACGGCGATCTCCGAGCAATCGTAGACGGTTACATGAGTCACTACGACGAAATATTTGAGTTGAAAAGTGTGGGAGCAAAATCAGATGTGTTTCATTTGATGACGGGAATGTGGATGAGTCCGGCGGAGCGTTGCTTCCTTTGGATCGGAGGATTCCGGCCGTCGAAGCTCATAGAGATGGTAATCCCGCAGTTAGAGACATTAACGGAGCAGCAAGCTGTAGGAATATGTAATTTGCAGAGATGTTCACAAGAAACAGAGGATGCTCTGTATCAGGGGCTTGACCAGTTCCACCATTCTCTCATAATGGCCGTCGCCGGCACCGCCATGATGGAGGGGGTCAACCACATGGCCGTGGCCGCCGGGAAGCTCTCCAACCTCGAAGGCTTCATTCGCCAGGCTGACATGTTGAGACAACAAACGCTTCATCAATTATGTAGAATATTGACGGCTCGACAGGCAGCTCGATGCTTCATGGTAATTGGAGAGTACTATGGAAGACTAAGAGCTCTTAGTTCATTGTGGGTTTCCCGACCAAGAGAGTCCATGCCAAACAGCAGCAACAAGAAGAAGAACAGAGGAAGAGATGATTCAGAATCAGATTCAGAGTGA 1089 48.48 MANLSSFINPEGSSFDFEELEEAIVLQRVELQNDELQSSQPSSNQNQSQRKGANSTSQRQLDAKTLRRLAQNRVAAKKSRLRKKTYIQQLESSRIKLSQLEQDLHRARSEGLFLGACGGVMGGNISSGAAIFDMEYARWLDNDLRMMSELRAAVEGHLPDGDLRAIVDGYMSHYDEIFELKSVGAKSDVFHLMTGMWMSPAERCFLWIGGFRPSKLIEMVIPQLETLTEQQAVGICNLQRCSQETEDALYQGLDQFHHSLIMAVAGTAMMEGVNHMAVAAGKLSNLEGFIRQADMLRQQTLHQLCRILTARQAARCFMVIGEYYGRLRALSSLWVSRPRESMPNSSNKKKNRGRDDSESDSE 362
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 4225480 4228837 + Carg24394-RA Car13g00231 159148
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car13g00231 362 ProSiteProfiles DOG1 domain profile. 129 337 IPR025422 GO:0006351|GO:0043565
Car13g00231 362 ProSitePatterns Basic-leucine zipper (bZIP) domain signature. 67 82 IPR004827 GO:0003700|GO:0006355
Car13g00231 362 Coils Coil 17 37 - -
Car13g00231 362 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 62 106 IPR004827 GO:0003700|GO:0006355
Car13g00231 362 MobiDBLite consensus disorder prediction 338 362 - -
Car13g00231 362 Pfam bZIP transcription factor 63 104 IPR004827 GO:0003700|GO:0006355
Car13g00231 362 MobiDBLite consensus disorder prediction 34 63 - -
Car13g00231 362 MobiDBLite consensus disorder prediction 343 362 - -
Car13g00231 362 Coils Coil 83 110 - -
Car13g00231 362 Pfam Seed dormancy control 147 221 IPR025422 GO:0006351|GO:0043565
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car13g00231 Car-Chr13:4225480 Car18g00615 Car-Chr18:7367620 5.56E-179 dispersed
Car13g00231 Car-Chr13:4225480 Car06g00074 Car-Chr6:464387 1.40E-114 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
4513 PF14144 DOG1 2.50E-30 No_clan Car TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car13g00231 K14431 - csv:101204604 524.628