Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Car13g00238 ATGGCCTCAAAATCGGCTTCCAAACCTTCTGCAACTGATCCACTTATCTCTGGAGATGTATTGAACTCCACGCAGAGATCCTTGAATCAGTGTACTTTGAGTGATTCATCAAGCACCAAAGAGATCACATTGACCCAGCGAGATCCTGCGCTTACCGGGACTCGGGGTGTAGCAGAGGACTCTGTGGAACCTGAAAAGAAGACATCAGAATGTGAGAGTGGGAAGGATACGAACAGTGTTGCTAAGAGCAGTGGAAGTGGTAAGATTAGTAACTGTGTGGAGATGGTTGAGAGTGGGAAGAGCAGCGTGTGTCGGGGTAGCACGAGCAGCGATATCAGCGATGAAAGCAGCTGTAGCAGCTTTAGTAGTAGCATCAGTAAGCCTCACAAGTCGAATGACTTGAGATGGGAGGCCATCCAAGCTGTCCGTGCAAGGGATGGGATTTTGGGATTAGGCCATTTTAGACTGTTGAAGAGACTAGGTTGTGGCGATATCGGAAGCGTCTACTTGTCGGAGTTGAGCGGTACTAAATGTTACTTTGCAATGAAGGTCATGGATAAAGGGTCTCTAGCGAGTCGAAAGAAGTTGCTTCGTGCTCAGACCGAACGAGAAATACTGCAATCTCTTGATCATCCATTCCTGCCTACATTGTATACTCATTTCGAAACTGATAAGTTCTCATGCTTGGTGATGGAGTTCTGCCCTGGGGGAGACTTGCACACTCTAAGGCAGAGACAGCCCGGGAAGCATTTTCCCGAACAGGCCGTGAAATTTTATGTAGCAGAGGTCCTCCTAGCACTTGAGTATCTTCACATGCTCGGGATCATATACCGGGACCTTAAGCCCGAGAATGTTCTCGTGAGGGAGGACGGACACATAATGCTTTCAGATTTTGATCTTTCCTTAAGATGTGCTGTTAGTCCAACGTTGGTTAAGGGCTCATGTTCGGAGTCCGAGGCGTTGAGAAAGAATTCAGTTTATTGTGCTCAACCGGCTTGTATCCAACCTTCCTGCATCCAGCCATCCTGTGTAGTTCCCACCATGTGCTTCTCTCCCAGGCTTTTCTCTAGCAAGTCAAAGAAGGATAGGAAACCCAAGATTGAAATAGGAAACCAGGTAACGCCATTGCCAGAGCTCGTTGCAGAGCCTACGGAGGCAAGGTCGATGTCGTTCGTTGGTACACACGAGTACTTGGCGCCCGAGATCATTAAAGGCGAAGGTCATGGAAGTGCTGTTGACTGGTGGACATTTGGGATCTTTCTATATGAACTGTTGTTTGGTAAAACTCCTTTTAAGGGATCTGGGAATCGAGCAACGTTGTTCAACGTCGTCGGTCAGCCTTTACGGTTTCCTGAATCACCAGTTGTTAGTTTTGCTGCGAGAGATCTCATCAGGGGATTGCTTGTCAAGGAACCACAGCATAGATTAGCTTACAAACGAGGAGCAACTGAGATCAAACAACACCCCTTCTTTGAAGGTGTTAACTGGGCATTGATACGATGCGCTTCGCCACCGGAAGTACCAAAGCCTGTCGAGATCGAGCGGATACCCTCACCAACACCTCCAGTCAGTGGAAAAACTGTAATGGCCAGACCTGGCCCTGACTCCAAATCATCTGATAATTATCTGGAGTTTGATTTCTTTTAG 1647 47.66 MASKSASKPSATDPLISGDVLNSTQRSLNQCTLSDSSSTKEITLTQRDPALTGTRGVAEDSVEPEKKTSECESGKDTNSVAKSSGSGKISNCVEMVESGKSSVCRGSTSSDISDESSCSSFSSSISKPHKSNDLRWEAIQAVRARDGILGLGHFRLLKRLGCGDIGSVYLSELSGTKCYFAMKVMDKGSLASRKKLLRAQTEREILQSLDHPFLPTLYTHFETDKFSCLVMEFCPGGDLHTLRQRQPGKHFPEQAVKFYVAEVLLALEYLHMLGIIYRDLKPENVLVREDGHIMLSDFDLSLRCAVSPTLVKGSCSESEALRKNSVYCAQPACIQPSCIQPSCVVPTMCFSPRLFSSKSKKDRKPKIEIGNQVTPLPELVAEPTEARSMSFVGTHEYLAPEIIKGEGHGSAVDWWTFGIFLYELLFGKTPFKGSGNRATLFNVVGQPLRFPESPVVSFAARDLIRGLLVKEPQHRLAYKRGATEIKQHPFFEGVNWALIRCASPPEVPKPVEIERIPSPTPPVSGKTVMARPGPDSKSSDNYLEFDFF 548
       

Gff information


Chromosome Start End Strand Old_gene Gene Num
13 4356017 4358212 - Carg24387-RA Car13g00238 159155
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Car13g00238 548 CDD STKc_phototropin_like 153 514 - -
Car13g00238 548 SMART serkin_6 154 491 IPR000719 GO:0004672|GO:0005524|GO:0006468
Car13g00238 548 PANTHER FLIPPASE KINASE 1-RELATED 27 548 - -
Car13g00238 548 MobiDBLite consensus disorder prediction 1 50 - -
Car13g00238 548 MobiDBLite consensus disorder prediction 515 540 - -
Car13g00238 548 MobiDBLite consensus disorder prediction 59 73 - -
Car13g00238 548 Pfam Protein kinase domain 155 307 IPR000719 GO:0004672|GO:0005524|GO:0006468
Car13g00238 548 Pfam Protein kinase domain 388 491 IPR000719 GO:0004672|GO:0005524|GO:0006468
Car13g00238 548 Gene3D Transferase(Phosphotransferase) domain 1 385 509 - -
Car13g00238 548 ProSiteProfiles Protein kinase domain profile. 154 491 IPR000719 GO:0004672|GO:0005524|GO:0006468
Car13g00238 548 SUPERFAMILY Protein kinase-like (PK-like) 126 523 IPR011009 -
Car13g00238 548 MobiDBLite consensus disorder prediction 1 86 - -
Car13g00238 548 PANTHER SERINE/THREONINE KINASE FAMILY PROTEIN 27 548 - -
Car13g00238 548 Gene3D Transferase(Phosphotransferase) domain 1 238 306 - -
Car13g00238 548 ProSitePatterns Serine/Threonine protein kinases active-site signature. 275 287 IPR008271 GO:0004672|GO:0006468
Car13g00238 548 Gene3D Phosphorylase Kinase; domain 1 152 237 - -
       

Duplication type information


Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car13g00238 Car-Chr13:4356017 Car14g00612 Car-Chr14:3439977 0 dispersed
Car13g00238 Car-Chr13:4356017 Car18g00579 Car-Chr18:6510796 0 wgd
       

Transcription factors information


Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
89265 PF00069 Pkinase 6.40E-37 CL0016 Car PK
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car13g00238 K08286 - csv:101213662 946.421