Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car13g00298 ATGACAAGAAAGAAGGTGAAGCTGACATACATAACAAATGATGCAGCAAGAAAAGCCACATTCAAGAAGAGGAAGAAGGGCTTAATGAAGAAGCTCACCGAGCTCACCACACTTTGCGGTATCGAGGCGTGCGCCATAATTTTCAGTCCCTTCAATTCTCAACCCGATCTCTGGCCCTCTGTCGTCGGGCTCGAGAGGGTTCTCGCTAAGTTCAAAAGTCTTTCGGAGATGGAGCAATGCAATAAGATGGTGAACCAAGAGACCTTCCTCCGTGACCGCATAGCTAAAGCGACTGACCAACTCAAGAAGTTGCAAAGGGAGAATCGTGAGAAGGAGATCACAAGACTCATGTTTGAAAGCCTCGTGGCTGGAGCGACTCCGCCACGAGATCTCAATATCATTGATTTGTATGATCTCGTTTGGTTTGTTGATGAGACAATGACTGATGTTTGTAAGAGGATTGAGTTGCTTACGACAACTATGACCGAACCGCCGGTTGGGTCGGCGGTCGAGCCGTCGTGGTTCATGGAGATGATGAGTCATGGAGCCTATGATGATCAAATGGGATTCAAGATTTGGGATGATGTGATTCAACTTCCAAATGATGATAACCATGGTGCATTTTGGTCAAACAATGGCTCTCCTTGA 648 46.6 MTRKKVKLTYITNDAARKATFKKRKKGLMKKLTELTTLCGIEACAIIFSPFNSQPDLWPSVVGLERVLAKFKSLSEMEQCNKMVNQETFLRDRIAKATDQLKKLQRENREKEITRLMFESLVAGATPPRDLNIIDLYDLVWFVDETMTDVCKRIELLTTTMTEPPVGSAVEPSWFMEMMSHGAYDDQMGFKIWDDVIQLPNDDNHGAFWSNNGSP 215
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 5438566 5439213 - Carg25123-RA Car13g00298 159215
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car13g00298 215 SUPERFAMILY SRF-like 2 95 IPR036879 GO:0003677|GO:0046983
Car13g00298 215 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Car13g00298 215 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Car13g00298 215 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Car13g00298 215 PANTHER SERUM RESPONSE FACTOR HOMOLOG 1 161 - -
Car13g00298 215 ProSiteProfiles MADS-box domain profile. 1 49 IPR002100 GO:0003677|GO:0046983
Car13g00298 215 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 50 IPR002100 GO:0003677|GO:0046983
Car13g00298 215 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Car13g00298 215 Gene3D - 13 97 IPR036879 GO:0003677|GO:0046983
Car13g00298 215 CDD MADS_SRF_like 2 85 IPR033897 GO:0000981|GO:0000987|GO:0045944
Car13g00298 215 Coils Coil 87 114 - -
Car13g00298 215 PANTHER AGAMOUS-LIKE MADS-BOX PROTEIN AGL80 1 161 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car13g00298 Car-Chr13:5438566 Car02g00456 Car-Chr2:3563583 5.06E-13 dispersed
Car06g00472 Car-Chr6:2606868 Car13g00298 Car-Chr13:5438566 1.44E-34 transposed
Car10g01041 Car-Chr10:10652330 Car13g00298 Car-Chr13:5438566 1.99E-73 transposed
Car11g01007 Car-Chr11:7011197 Car13g00298 Car-Chr13:5438566 2.82E-66 transposed
Car13g00298 Car-Chr13:5438566 Car18g00572 Car-Chr18:6171828 1.54E-95 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
4518 PF00319 SRF-TF 1.30E-17 No_clan Car TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car13g00298 - - csv:101219796 316.62