Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car13g00298 ATGACAAGAAAGAAGGTGAAGCTGACATACATAACAAATGATGCAGCAAGAAAAGCCACATTCAAGAAGAGGAAGAAGGGCTTAATGAAGAAGCTCACCGAGCTCACCACACTTTGCGGTATCGAGGCGTGCGCCATAATTTTCAGTCCCTTCAATTCTCAACCCGATCTCTGGCCCTCTGTCGTCGGGCTCGAGAGGGTTCTCGCTAAGTTCAAAAGTCTTTCGGAGATGGAGCAATGCAATAAGATGGTGAACCAAGAGACCTTCCTCCGTGACCGCATAGCTAAAGCGACTGACCAACTCAAGAAGTTGCAAAGGGAGAATCGTGAGAAGGAGATCACAAGACTCATGTTTGAAAGCCTCGTGGCTGGAGCGACTCCGCCACGAGATCTCAATATCATTGATTTGTATGATCTCGTTTGGTTTGTTGATGAGACAATGACTGATGTTTGTAAGAGGATTGAGTTGCTTACGACAACTATGACCGAACCGCCGGTTGGGTCGGCGGTCGAGCCGTCGTGGTTCATGGAGATGATGAGTCATGGAGCCTATGATGATCAAATGGGATTCAAGATTTGGGATGATGTGATTCAACTTCCAAATGATGATAACCATGGTGCATTTTGGTCAAACAATGGCTCTCCTTGA 648 46.6 MTRKKVKLTYITNDAARKATFKKRKKGLMKKLTELTTLCGIEACAIIFSPFNSQPDLWPSVVGLERVLAKFKSLSEMEQCNKMVNQETFLRDRIAKATDQLKKLQRENREKEITRLMFESLVAGATPPRDLNIIDLYDLVWFVDETMTDVCKRIELLTTTMTEPPVGSAVEPSWFMEMMSHGAYDDQMGFKIWDDVIQLPNDDNHGAFWSNNGSP 215
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 5438566 5439213 - Carg25123-RA Car13g00298 159215

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Car13g00298 215 SUPERFAMILY SRF-like 2 95 IPR036879 GO:0003677|GO:0046983
Car13g00298 215 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Car13g00298 215 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Car13g00298 215 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Car13g00298 215 PANTHER SERUM RESPONSE FACTOR HOMOLOG 1 161 - -
Car13g00298 215 ProSiteProfiles MADS-box domain profile. 1 49 IPR002100 GO:0003677|GO:0046983
Car13g00298 215 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 50 IPR002100 GO:0003677|GO:0046983
Car13g00298 215 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Car13g00298 215 Gene3D - 13 97 IPR036879 GO:0003677|GO:0046983
Car13g00298 215 CDD MADS_SRF_like 2 85 IPR033897 GO:0000981|GO:0000987|GO:0045944
Car13g00298 215 Coils Coil 87 114 - -
Car13g00298 215 PANTHER AGAMOUS-LIKE MADS-BOX PROTEIN AGL80 1 161 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car13g00298 - - - csv:101219796 316.62
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car13g00298 Car-Chr13:5438566 Car02g00456 Car-Chr2:3563583 5.06E-13 dispersed
Car06g00472 Car-Chr6:2606868 Car13g00298 Car-Chr13:5438566 1.44E-34 transposed
Car10g01041 Car-Chr10:10652330 Car13g00298 Car-Chr13:5438566 1.99E-73 transposed
Car11g01007 Car-Chr11:7011197 Car13g00298 Car-Chr13:5438566 2.82E-66 transposed
Car13g00298 Car-Chr13:5438566 Car18g00572 Car-Chr18:6171828 1.54E-95 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Car04g00399 . 4 159 Type I MADS-box Gene Family AT2G24840 54.1 1.3e-37 154.1
Car04g00399 . 1 165 Type I MADS-box Gene Family AT5G60440 61.9 4.7e-49 192.2
Car16g00706 . 1 211 Type I MADS-box Gene Family AT1G77950 54.0 4.1e-54 208.8
Car10g01041 . 1 157 Type I MADS-box Gene Family AT5G48670 65.6 7.6e-53 204.9
Car11g01007 . 1 154 Type I MADS-box Gene Family AT5G48670 61.0 5.6e-48 188.7
Car18g00572 . 1 184 Type I MADS-box Gene Family AT5G48670 53.3 1.6e-47 187.2
Car13g00298 . 1 170 Type I MADS-box Gene Family AT5G48670 54.1 1.7e-44 177.2
Car04g00399 . 4 159 Type I MADS-box Gene Family AT2G24840 54.1 1.3e-37 154.1
Car04g00399 . 1 165 Type I MADS-box Gene Family AT5G60440 61.9 4.7e-49 192.2
Car16g00706 . 1 211 Type I MADS-box Gene Family AT1G77950 54.0 4.1e-54 208.8
Car10g01041 . 1 157 Type I MADS-box Gene Family AT5G48670 65.6 7.6e-53 204.9
Car11g01007 . 1 154 Type I MADS-box Gene Family AT5G48670 61.0 5.6e-48 188.7
Car18g00572 . 1 184 Type I MADS-box Gene Family AT5G48670 53.3 1.6e-47 187.2
Car13g00298 . 1 170 Type I MADS-box Gene Family AT5G48670 54.1 1.7e-44 177.2
Car04g00399 . 1 165 Type I MADS-box Gene Family AT5G60440 61.9 4.7e-49 192.2
Car10g01041 . 1 157 Type I MADS-box Gene Family AT5G48670 65.6 7.6e-53 204.9
Car11g01007 . 1 154 Type I MADS-box Gene Family AT5G48670 61.0 5.6e-48 188.7
Car18g00572 . 1 184 Type I MADS-box Gene Family AT5G48670 53.3 1.6e-47 187.2
Car13g00298 . 1 170 Type I MADS-box Gene Family AT5G48670 54.1 1.7e-44 177.2
Car04g00399 . 4 159 Type I MADS-box Gene Family AT2G24840 54.1 1.3e-37 154.1
Car16g00706 . 1 211 Type I MADS-box Gene Family AT1G77950 54.0 4.1e-54 208.8
Car04g00399 . 1 165 Type I MADS-box Gene Family AT5G60440 61.9 4.7e-49 192.2
Car10g01041 . 1 157 Type I MADS-box Gene Family AT5G48670 65.6 7.6e-53 204.9
Car11g01007 . 1 154 Type I MADS-box Gene Family AT5G48670 61.0 5.6e-48 188.7
Car18g00572 . 1 184 Type I MADS-box Gene Family AT5G48670 53.3 1.6e-47 187.2
Car13g00298 . 1 170 Type I MADS-box Gene Family AT5G48670 54.1 1.7e-44 177.2
Car04g00399 . 4 159 Type I MADS-box Gene Family AT2G24840 54.1 1.3e-37 154.1
Car16g00706 . 1 211 Type I MADS-box Gene Family AT1G77950 54.0 4.1e-54 208.8
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001414 5 4 2 4 3 2 4 2 2 2 2 2 2 2 3 2 2 3 4 2 2 3 2 2 2 2 2 2 2 1 74
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
4518 PF00319 SRF-TF 1.30E-17 No_clan Car TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Car13g00298 Car_Chr13 FPKM 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0