Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car13g00311 ATGGCTCTGTGGGTCTTCATCTTGATGATTTTCTTGTTGATCTTTGGTTTTATTCCTGTTTCTCCTGCTCTTACTGATGATTCTGATGTTCAAGCTTTGCAAGTTATATACACTTCATTGAACAGTCCTCCTCAGCTGACTGGTTGGATTGCTAGTGGTGGGGATCCATGTGCAGAGTCATGGAAGGGTGTGGCTTGTGAAGGGTCTGCTGTTGTGTCCATTGAGATTTCTGGTTTAGAGCTGAATGGAACGATGGGTTATGCGCTTTCGAGTCTTTTGTCATTGAAAGAACTTGATATAAGCGACAACCTTATTCATGACTCGATTCCTTACCAATTGCCGCCGAATCTCACGAGACTAAATATGGCGAAAAACAGCTTAAGTGGTAATCTTCCTTATTCCTTTTCCACCATGGCTTCTCTCAGTTATTTGAATATGAGCCACAATTTGCTATCTCAGGCGATAGGAGACGTTTTCACCAATCTTTCTACCCTGGGAACGTTGGATCTTTCTTTCAACAACTTTACTGGAGATCTTCCTAAATCCTTGAGCTCTTTATCCAATGTTTCTTCCCTCTTTCTGCAGAACAACCAATTGACTGGTTCTCTCAATAATCTCATCAGTTTGCCTCTGACCACTCTAAATGTAGCAAACAATAATTTCAGTGGATGGATACCTCAAGAACTGAAGTCGATCGAAAATTTCATATACGATGGAAATTCATTTGATGATAGTCCTGCACCTCCTCCCCCGCCTTTTACTCCACCGCCTCCTGGTAGATCTCGTAACAGCTCCAGACATCCCGGGTCTGGCGGTGGCACCCATACCACCCCAAGTTCTGATACGAGCTCATCCCACTCGAACAAAGGCTTGTCAGTTTTGGTTATGGTGGGGATAATTTTGGGTGCTATAATTATTGCCCTCATTGTGTTAGTTGCTTTCGCTGTCTGCATCATGAAGAGAAAACGCAAGAACATTGGTCTAAGAGCTTCCAGTGGAAGGCTGTCATTTGGCAACAATGTGAATGCTGAGGTGGAAGAGCGTCGGGGAAAAAGCGTTGTTGCTGTTGGAGATATTAAGCCTCTTCGTACCGAGAAAATAAATCCCGAGAGGTTACAGGCGACGAATGGATCAGTGAAAAGAATGAAGTCCCCTATCACTGCTACTTCTTACACCGTGGCTGCTCTTCAAAGTGCAACGAATAGTTTTAGCCAAGAATGCATAGTTGGTGAAGGTTCGCTCGGTCGTGTTTACAAATCGGAGTTTCCAAATGGGAAGATAATGGCGATAAAGAAAATCGATAACGCAGCACTATCACTACAAGAGGAAGACAATTTTCTTGAAGCGGTTTCAAACATGTCACGATTGAGGCATACGAACATTGTGACACTAAATGGTTATTGTGTGGAATATGGTCAGCGTCTTCTAGTTTACGAGTTCATTGGAAATGGAAGTTTACACGACATGCTCCATTTTGCTGATGAAAGTAGCAAGACACTGACTTGGAATGCACGTGTACGCGTAGCGCTTGGAACCGCCCGAGCTTTAGAATACTTGCATGAGGTTTGCTTGCCTTCCGTTGTACATAGAAACTTGAAAAGTGCAAACATTTTACTTGATGAAGAGCTCAATCCCCATTTGTCAGATTGTGGTTTAGCTGCTTTAACACCGAACACAGGGCGACAGATATCTACTCAGATGGTTGGTTCATTTGGCTATAGTGCTCCGGAATTTGCCTTGTCGGGTTTGTACACGGTCAAAAGTGACGTTTATAGCTTTGGGGTCGTGATGTTGGAGCTCTTGAGTGGCCGAAAGCCGCTTGCTTTGTGTCCAGGTATACTTCTTTATAACTTT 1854 43.58 MALWVFILMIFLLIFGFIPVSPALTDDSDVQALQVIYTSLNSPPQLTGWIASGGDPCAESWKGVACEGSAVVSIEISGLELNGTMGYALSSLLSLKELDISDNLIHDSIPYQLPPNLTRLNMAKNSLSGNLPYSFSTMASLSYLNMSHNLLSQAIGDVFTNLSTLGTLDLSFNNFTGDLPKSLSSLSNVSSLFLQNNQLTGSLNNLISLPLTTLNVANNNFSGWIPQELKSIENFIYDGNSFDDSPAPPPPPFTPPPPGRSRNSSRHPGSGGGTHTTPSSDTSSSHSNKGLSVLVMVGIILGAIIIALIVLVAFAVCIMKRKRKNIGLRASSGRLSFGNNVNAEVEERRGKSVVAVGDIKPLRTEKINPERLQATNGSVKRMKSPITATSYTVAALQSATNSFSQECIVGEGSLGRVYKSEFPNGKIMAIKKIDNAALSLQEEDNFLEAVSNMSRLRHTNIVTLNGYCVEYGQRLLVYEFIGNGSLHDMLHFADESSKTLTWNARVRVALGTARALEYLHEVCLPSVVHRNLKSANILLDEELNPHLSDCGLAALTPNTGRQISTQMVGSFGYSAPEFALSGLYTVKSDVYSFGVVMLELLSGRKPLALCPGILLYNF 618
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 5657182 5662521 - Carg26131-RA Car13g00311 159228
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car13g00311 618 MobiDBLite consensus disorder prediction 263 287 - -
Car13g00311 618 ProSiteProfiles Protein kinase domain profile. 403 618 IPR000719 GO:0004672|GO:0005524|GO:0006468
Car13g00311 618 MobiDBLite consensus disorder prediction 241 287 - -
Car13g00311 618 MobiDBLite consensus disorder prediction 244 262 - -
Car13g00311 618 Pfam Leucine rich repeat N-terminal domain 27 66 IPR013210 -
Car13g00311 618 Pfam Protein kinase domain 405 608 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car04g01905 Car-Chr4:11251742 Car13g00311 Car-Chr13:5657182 1.95E-11 dispersed
Car13g00311 Car-Chr13:5657182 Car01g00018 Car-Chr1:92178 9.52E-168 dispersed
Car13g00311 Car-Chr13:5657182 Car18g00525 Car-Chr18:4125365 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
89267 PF00069 Pkinase 5.90E-39 CL0016 Car PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car13g00311 - - mcha:111012621 939.488