Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car13g00345 ATGAAGACAGAGAATGGGCTGAGAAAACAAGGGGGCGGAGGAGCAGCGCCATGCGCAGCATGCAAGCTGCTGAGAAGAAGGTGCGGCGAGGAATGTGTATTCGCGCCATACTTCCCCGCCGACCAGCCCCATAAGTTCGCCAATGTCCACAAGGTGTTCGGCGCCAGCAACGTCAACAAAATGCTCCAGGAGTTGCCACTTCACCAGCGGGGAGATGCAGTGAGCAGTTTAGTATATGAAGCGAACGCTAGAGTGCGCGACCCGGTCTATGGGTGTGTGGGAGCGATATCGTCTCTACAGCAGCAGATAGACAGCCTCCAAACTCAGCTGGCTCTGGCTCAAGCTGAGGTTGTGCACCTAAGGGTGCGACAGACAGCATCATTTTCAAACTATGGGCTAAGCCCAACAAGCCCAGGTAACAGTGGGTCACCCTCATCAAGGCTCATGGGCTCACAATCCTCCAGGCCCATGTTTGAGATGGATATGGTCGTGGACCAGGCCATGGGGGACTCAGTGTGGTGA 522 55.56 MKTENGLRKQGGGGAAPCAACKLLRRRCGEECVFAPYFPADQPHKFANVHKVFGASNVNKMLQELPLHQRGDAVSSLVYEANARVRDPVYGCVGAISSLQQQIDSLQTQLALAQAEVVHLRVRQTASFSNYGLSPTSPGNSGSPSSRLMGSQSSRPMFEMDMVVDQAMGDSVW 173
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 6076039 6077826 - Carg21434-RA Car13g00345 159262
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car13g00345 173 PANTHER LOB DOMAIN-CONTAINING PROTEIN 3 8 163 - -
Car13g00345 173 Coils Coil 96 123 - -
Car13g00345 173 MobiDBLite consensus disorder prediction 131 154 - -
Car13g00345 173 MobiDBLite consensus disorder prediction 131 153 - -
Car13g00345 173 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 8 163 - -
Car13g00345 173 Pfam Lateral organ boundaries (LOB) domain 17 114 IPR004883 -
Car13g00345 173 ProSiteProfiles LOB domain profile. 16 117 IPR004883 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car02g00017 Car-Chr2:178245 Car13g00345 Car-Chr13:6076039 9.10E-67 dispersed
Car13g00345 Car-Chr13:6076039 Car19g00864 Car-Chr19:8993376 4.56E-57 dispersed
Car13g00345 Car-Chr13:6076039 Car11g01652 Car-Chr11:12991308 3.38E-61 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
4521 PF03195 LOB 2.00E-43 No_clan Car TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car13g00345 - - csv:101202930 300.056