Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car13g00361 ATGGGGATTCTTCTCTTCTATCTTCCTTTGATTTGGCTGTCTTCTTCTTCTCCTTCTCATGCTCTTCAACAAAGCTTTGTGGAGTGCTTTAGTTCTCATTCTTCACCTCAATCAATACCCATTTCTAAAGTGGTTTTTACAAATGAAAGTGCTTCCTTCTCCTCTCTCTTGCACCAATCCATAAGAAATCTAAGGTTTCTCAACACTTCTTCTAAACCATTGTTCTTGGTGACCCCATTTCATGAATCACATGTTCAAGCCGCAGTCGTTTGCGCCCAGAAGAAGGGTTTGCAGCTCCGAGTAAGGAGTGGTGGACATGACTATGAAGGTCTTTCTTACGTATCATCACAATCTCAATTCATCCTTCTTGATCTTTCCAACCTTCACTCCATCGATATCGACATCGAGACCGAAACCGCCTCCGTGGAGACCGGTGCCACGCTCGGCGAGTTATACTATAGAATAGCTGAGAAAAGCCTCATCCATGGATTCCCAGCAGGAAGCTGCCCCACAGTAGGGGTAGGAGGGCATATAAGTGGAGGAGGCTTTGGAACCCTCTTCAGAAAACATGGCCTTGCAGCTGATAACGTAATCGATGCTAAGATTGTGGACTTCAATGGAAGAATCATGGACAGAAACACCATGGGAGAGGAGCTTTTTTGGGCCATTAGAGGCGGTGGAGGGGCAAGTTTTGGAGTGATATTGTCATGGAAGCTCAAGCTAGTTTGTTTACCACCAAAACTCACAATTTTCCACGTTCAAAAAACTCCCAAACAAGGCGCAATTCAGCTCTTCCAAAAATGGCAAAGAATTGCATACAAACTTGATGAAGATCTCTTCCTTCATGTCACCATAGGCGTTCAAGAACAAACAATTTCCCTTTCATTTGTGGCATTATTTCTTGGTCCAATTGAGAAACTCATACCTCTTATGAACACCCAATTCCCAGAATTGGGATTGCAAAGAGAAAACTACACTGAAATGAATTGGATTCAATCAATTCTCTTCTTTGCTGGCTTCCCTATACAAACCCCACCTCAAATTTTGCTTAAAAAATCACTTTCCAATGCGTTCTTCAAAGCAAAATCGGATTTTGTGACATACCCAATTCCTCAAAATGGGTTGGAAGGGCTTTGGAATAAGGTGTTAGAAGAAGAAGGATCATACTTGATTTTGACACCATATGGAGGAAAAATGAGCCAAATTTCTGAGTTGGAAACCCCTTTTCCTCATAGAAAAGGGAACATTTTTGGGATTCAATATATGGTGAGTTGGGAAAATGGTAGTGAAAGCTACAAGCATTTGAGTTGGATAAGGGAGGTTTATGCATATATGGAACCCTATGTTTCAAAGGATCCAAGAGGTGCTTATTTGAACTATAGAGATCTTGATTTGGGGAGGAATTATGGAAGAAATGTAAGGTATGAAGAGGCTAAAGTGTGGGGTTTGAAGTATTATAGAAGTAATTTTGAGAGATTGGTGAGGGTTAAGACCAAAGTTGATCCTTTCAATTTCTTTTGGAATGAACAAAGCATTCCTACGTCCCTCTACCGTTCTTAA 1560 41.22 MGILLFYLPLIWLSSSSPSHALQQSFVECFSSHSSPQSIPISKVVFTNESASFSSLLHQSIRNLRFLNTSSKPLFLVTPFHESHVQAAVVCAQKKGLQLRVRSGGHDYEGLSYVSSQSQFILLDLSNLHSIDIDIETETASVETGATLGELYYRIAEKSLIHGFPAGSCPTVGVGGHISGGGFGTLFRKHGLAADNVIDAKIVDFNGRIMDRNTMGEELFWAIRGGGGASFGVILSWKLKLVCLPPKLTIFHVQKTPKQGAIQLFQKWQRIAYKLDEDLFLHVTIGVQEQTISLSFVALFLGPIEKLIPLMNTQFPELGLQRENYTEMNWIQSILFFAGFPIQTPPQILLKKSLSNAFFKAKSDFVTYPIPQNGLEGLWNKVLEEEGSYLILTPYGGKMSQISELETPFPHRKGNIFGIQYMVSWENGSESYKHLSWIREVYAYMEPYVSKDPRGAYLNYRDLDLGRNYGRNVRYEEAKVWGLKYYRSNFERLVRVKTKVDPFNFFWNEQSIPTSLYRS 519
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 6239647 6241879 + Carg21418-RA Car13g00361 159278
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car13g00361 519 ProSiteProfiles PCMH-type FAD-binding domain profile. 69 244 IPR016166 GO:0071949
Car13g00361 519 Pfam FAD binding domain 73 210 IPR006094 GO:0050660
Car13g00361 519 Pfam Berberine and berberine like 456 513 IPR012951 GO:0016491|GO:0050660
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Car03g01320 Car13g00361 CCT
Car13g00361 Car18g00489 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car03g01320 Car-Chr3:10039578 Car13g00361 Car-Chr13:6239647 1.70E-19 dispersed
Car03g01321 Car-Chr3:10050226 Car13g00361 Car-Chr13:6239647 5.73E-175 dispersed
Car13g00361 Car-Chr13:6239647 Car13g00362 Car-Chr13:6245802 0 tandem
Car13g00361 Car-Chr13:6239647 Car18g00489 Car-Chr18:3295090 0 wgd
Car13g00361 Car-Chr13:6239647 Car03g01318 Car-Chr3:10034258 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car13g00361 - - csv:101214057 788.875