Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Car13g00382 | ATGAGTAATTTATCAGCGGATTTCAGGAGGCATGAATCAGCTAAAAGTAGATTGAAAGATTTATTGCTTCAGAAAGATAATCAAGTTTGTGCAGATTGTGGTGCCCCAGATCCTAAATGGGCCTCTGCAAATATTGGTGTGTTTATATGCTTAAAATGTAGTGGCGTGCACAGAAGCCTTGGAACACACATATCAAAGGTTTTGTCAATAACATTGGATGAATGGTCTGATGATGAGATTGATGCAATGATAGAGGTTGGAGGAAATGGTTCTGCTAATGCAATATATGAGGCCTTTATCCCTGTTGGATATACGAAACCTGGACCAAGTGCCAGCCATGAGGATCGCTCAAGGTTCATTCGGTCTAAGTATGAACTTCAAGAATTTTTAAAACCGAGCTTGCGAATTGTATCCAATAACTCCTCAAAGGAACCTGAGGAGCCAAGTTATTTTGAAGAGATTGTTGATAGCTTTCGAAGCTCAAATTCTTCAAAGAAATCACCACAAGAAGGCATGGTTGAATTTATGGGATTACTGAAAGTCAAGGTGATTAAAGGCACAAACTTAGCCGTGAGAGATATGAAGTCCAGTGATCCTTTCATTACCTTGACTCTTGGGCAACAGACTGCTAAAACAACAGTGATAAAGAGCAACTTGAATCCAGTTTGGAACGAGGAACTCATGTTGTCGGTTCCTCAGGAATACGGACCCTTGAAGTTGCAAGTGTTCGATCACGACATAATTTCAGCAAACGACTTAATGGGCGAAGCAGAAATCGACCTCCAGCCGATGATAACATCAGCAATGGCATTTGGAGATGCTAAAATGTTTGAGAATATGCAGATAGGAAAATGGTTGAAGTCAGACGACAATGCCCTGATCGACGACAGTGCTGTCGTCATCGTCGACGGGATGGTCAAACAAGAGATGTCACTCAAGCTCCAAAACGTAGAATCAGGTGAAGTGTACTTAGAACTCGAGTGGATGCCTCTTGATCAGTAG | 1002 | 41.62 | MSNLSADFRRHESAKSRLKDLLLQKDNQVCADCGAPDPKWASANIGVFICLKCSGVHRSLGTHISKVLSITLDEWSDDEIDAMIEVGGNGSANAIYEAFIPVGYTKPGPSASHEDRSRFIRSKYELQEFLKPSLRIVSNNSSKEPEEPSYFEEIVDSFRSSNSSKKSPQEGMVEFMGLLKVKVIKGTNLAVRDMKSSDPFITLTLGQQTAKTTVIKSNLNPVWNEELMLSVPQEYGPLKLQVFDHDIISANDLMGEAEIDLQPMITSAMAFGDAKMFENMQIGKWLKSDDNALIDDSAVVIVDGMVKQEMSLKLQNVESGEVYLELEWMPLDQ | 333 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 13 | 6365479 | 6368920 | - | Carg21397-RA | Car13g00382 | 159299 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Car13g00382 | 333 | ProSiteProfiles | C2 domain profile. | 160 | 274 | IPR000008 | - | |
| Car13g00382 | 333 | ProSiteProfiles | ARF GTPase-activating proteins domain profile. | 15 | 144 | IPR001164 | GO:0005096 | |
| Car13g00382 | 333 | Pfam | Putative GTPase activating protein for Arf | 16 | 131 | IPR001164 | GO:0005096 | |
| Car13g00382 | 333 | Pfam | C2 domain | 177 | 267 | IPR000008 | - |
Event-related genes
| Select | Gene_1 | Gene_2 | Event_name |
|---|---|---|---|
| Car03g01308 | Car13g00382 | CCT | |
| Car07g00053 | Car13g00382 | CCT | |
| Car13g00382 | Car18g00478 | CST |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Car07g00053 | Car-Chr7:344749 | Car13g00382 | Car-Chr13:6365479 | 3.94E-63 | dispersed | |
| Car13g00382 | Car-Chr13:6365479 | Car15g00768 | Car-Chr15:4349247 | 1.57E-116 | dispersed | |
| Car14g01230 | Car-Chr14:10668286 | Car13g00382 | Car-Chr13:6365479 | 5.73E-17 | dispersed | |
| Car18g00083 | Car-Chr18:441192 | Car13g00382 | Car-Chr13:6365479 | 1.12E-26 | dispersed | |
| Car13g00382 | Car-Chr13:6365479 | Car18g00478 | Car-Chr18:3183455 | 0 | wgd | |
| Car13g00382 | Car-Chr13:6365479 | Car03g01308 | Car-Chr3:9994085 | 8.79E-56 | wgd | |
| Car13g00382 | Car-Chr13:6365479 | Car07g00052 | Car-Chr7:343146 | 1.49E-111 | wgd |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Car13g00382 | K12486 | - | csv:101211569 | 587.03 |