Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car13g00384 ATGGCTCTTGCTATGCATAGAGATTCCTTGAATAAGCAAATGGATACCAGCAAGTATGTAAGATATACACCTGAGCAAGTCGATGCATTAGAGAGGGTATATGCTGAATGCCCAAAGCCTAGTTCGTTGAGGAGGCAACAACTCATTCGTGAGTGTCCCATTCTCTCTAATATTGAGCCCAAACAGATCAAAGTTTGGTTCCAAAATCGCAGATGTCGTGAAAAGCAAAGGAAGGAAGCGTCTCGTCTTCAAACAGTTAATAGGAAGCTGACTGCGATGAACAAGCTGTTGATGGAAGAGAACGACCGTCTGCAGAAGCAGGTCTCTCGTTTGGTTTACAAGAACGGATACATGAGACAGCAACTGCGCACTGCATCTGGAACAACCACAGACAATAGCTGTGAGTCTGTGGTCATGAGTGGTCAACACCATCAACAGCAAAACCCAACTAAGCATACCCAAAAGGATGCTAATAACCCAGCTGGTCTTCTTGCGATAGCCGAGGAGACCTTGGCAGAGTTCCTTTCCAAGGCAACAGGAACCGCTGTCGACTGGGTTCAAATGATTGGGATGAAGCCTGGTCCGGATTCAATTGGGATTGTTGCTGTTTCTCGAAATTGCAATGGGGTAGCAGCACGAGCCTGTGGGTTAGTGAGTCTTGAGCCAACGAAGGTGGCCGAAATTCTCAAAGATCGTTTGTCATGGTTTCGTGACTGCCGTTGTGTTGATGTATTAAGTGTAATGTCCACCGGAAATGGGGGGACCATAGAACTCTTGTATACGCAGACATATGCACCTACAACCTTAGCAGCAGCACGTGACTTTTGGACTCTTCGATACACCACAAGCTTGGAAGATGGAAGCCTCGTGATATGTGAGAGATCGTTAACGTCGTCTACTGGTGGCCCATCAGGGCCCCCTCCATCCAGTTTCGTGAGAGCTGAAATGCTTCCGAGCGGATATCTTATTCGAGCTTGTGAGGACGGTTCCCTTATTCACATTGTGGATCATGTTGATTTAGATGCTTGGAGCGTTCCTGAAGTTCTTAGGCCACTTTATGAGTCGACAAAGATTCTAGCTCAGAGAAGGACTGTTGCTAATGTGCCCCCTGCTTTGCTTGTTCGTTTCTTACGGGAGCATCGTTCAGAATGGGCTGATTATGGAGTCGATGCATACTCGGCCGCATGTCTTAAATCCAGTGCATATGCTGTTCCATGTGCGAGACCCGGTGGCTTCCCTAGTGGTCAGGTCATTTTACCACTTGCGCATACCGTTGAAAACGAAGAGTTCTTGGAGGTCGTTCGGTTAGAGGGTCATGCTATGTTCCCTGAAGAAGCTGCGTTAGGTGGGCGGGATATGTATTTATTGCAGCTGTGTAGCGGGGTTGATGAAGGTACAGTCGGTTCCTGCGCTCAGCTTGTATTTGCACCTATCGACGAATCATTTGCCGACGATGCTCCCTTACTACCGTCTGGTTTTCGTGTCATACCATTGGAGTCCAAAACAGTTTGTGACTATCCTTAG 1524 47.57 MALAMHRDSLNKQMDTSKYVRYTPEQVDALERVYAECPKPSSLRRQQLIRECPILSNIEPKQIKVWFQNRRCREKQRKEASRLQTVNRKLTAMNKLLMEENDRLQKQVSRLVYKNGYMRQQLRTASGTTTDNSCESVVMSGQHHQQQNPTKHTQKDANNPAGLLAIAEETLAEFLSKATGTAVDWVQMIGMKPGPDSIGIVAVSRNCNGVAARACGLVSLEPTKVAEILKDRLSWFRDCRCVDVLSVMSTGNGGTIELLYTQTYAPTTLAAARDFWTLRYTTSLEDGSLVICERSLTSSTGGPSGPPPSSFVRAEMLPSGYLIRACEDGSLIHIVDHVDLDAWSVPEVLRPLYESTKILAQRRTVANVPPALLVRFLREHRSEWADYGVDAYSAACLKSSAYAVPCARPGGFPSGQVILPLAHTVENEEFLEVVRLEGHAMFPEEAALGGRDMYLLQLCSGVDEGTVGSCAQLVFAPIDESFADDAPLLPSGFRVIPLESKTVCDYP 507
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 6380963 6385780 + Carg21395-RA Car13g00384 159301
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car13g00384 507 Coils Coil 87 107 - -
Car13g00384 507 Pfam Homeodomain 18 76 IPR001356 GO:0003677
Car13g00384 507 Pfam START domain 166 367 IPR002913 GO:0008289
Car13g00384 507 ProSiteProfiles START domain profile. 156 355 IPR002913 GO:0008289
Car13g00384 507 ProSiteProfiles 'Homeobox' domain profile. 13 77 IPR001356 GO:0003677
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car13g00384 Car-Chr13:6380963 Car17g00717 Car-Chr17:6541955 1.29E-53 dispersed
Car13g00384 Car-Chr13:6380963 Car03g01305 Car-Chr3:9972929 6.23E-73 wgd
Car13g00384 Car-Chr13:6380963 Car07g00055 Car-Chr7:353870 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
4525 PF01852 START 4.00E-50 CL0209 Car TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car13g00384 K09338 - csv:101211318 688.723