Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car13g00395 ATGTTAGAACAGCTCGCACGAGTCTCAGACGGGGAGGACCTACCTTACGAATCCGCCATTAATTCCAATTCCAGTCAAAATTCCATGAGCAGTGACAGTTGCAGCAGTTTCAGTCGTCTCTCATTCGACGCCGCCACTGATTTACCCACTTCCCGATCCTCACCGGAGAGTCTCGATTTAAAGCCTCACCGATCATCTGATTTCGCTTACTCTGCTATTCGTCGTCGGAAATCCAAACTCACCTTCCGTGATTTTCGTCTCCTCCGCCGCATCGGCGCCGGTGACATTGGCACCGTCTACCTATGTCAGCTTAGAAACTCAACCGAAGGTTGTTATGAAGATGAAGATGACGATTCCTGTTTGTACGCCATGAAAGTAGTGGATAAGGATGCTCTGGAATTGAAGAAAAAGGTGCACCGAGCAGAAATGGAGAGGAAAATATTGAAAATGCTTGACCATCCGTTTTTGCCTACGCTTTACGCTGAATTTGAAGCTTCCCATTTCTCTTGCATCGTTATGGAGTTCTGTTCCGGCGGCGATTTGCATTCTCTCCGCCATAAACAGCCGCGGAAACGCTTCTCTCTCGCCTCTGCAAGGTTTTACGCCGCTGAAGTTCTTGTTGCTTTAGAGTATCTTCACATGCTTGGAATTATTTACAGAGACCTTAAGCCGGAGAATGTTCTCGTCCGATCAGATGGTCATATTATGTTATCGGATTTCGATTTATCTCTCTGTTCCGACGCTACTCCTGCCGTTGAATCGCCGAATTCCTCCCCTAATCCGGCATTGCCCGACTCAACGGCGTTCCCCAGAACCAACGCCGCCGCTGCCGCCTCCACAGCTCCATTTTCCTGCCTCTACAATCGGCTTTTCCGGTCGCGGAAGGTCCAAACCTTGACACCCAACTGGCTCTTTGTTGCGGAGCCTGTCTCCGCTCGGTCGTGCTCCTTCGTCGGTACCCATGAATATGTCTCGCCGGAAGTTGCCGCCGGTGGATCCCACGGCAACGCCGTCGACTGGTGGGCGTTCGGAGTGTTTCTCTACGAGCTGATCTATGGCCGGACGCCTTTCGCAGCGTCATCGAACGAGACGACGTTAAGGAACATCATAAAGAAGCCGTTGACGTTTCCGACCACCGGGTCGTCTGGGACGCTTGAACACCACGCGCGGGACCTGATATCCGGGTTGCTAAACAAAGACCCGACCCGAAGACTCGGGTCGAAACGCGGATCCGCCGACATAAAAAAGCACCCGTTCTTCAAGAGCCTGAACTTCGCCCTTATTCGGTCGCTGACTCCGCCGGAAGTCCCCGGCGTTGTAGTACCGCAGAAGCCAAAGCCAAAGCCGATAGCGTCAAGCAAAGCCAAGGTGAAGCCGGCTCATTCAGCTGGGTTCGATTACTTCTGA 1407 52.31 MLEQLARVSDGEDLPYESAINSNSSQNSMSSDSCSSFSRLSFDAATDLPTSRSSPESLDLKPHRSSDFAYSAIRRRKSKLTFRDFRLLRRIGAGDIGTVYLCQLRNSTEGCYEDEDDDSCLYAMKVVDKDALELKKKVHRAEMERKILKMLDHPFLPTLYAEFEASHFSCIVMEFCSGGDLHSLRHKQPRKRFSLASARFYAAEVLVALEYLHMLGIIYRDLKPENVLVRSDGHIMLSDFDLSLCSDATPAVESPNSSPNPALPDSTAFPRTNAAAAASTAPFSCLYNRLFRSRKVQTLTPNWLFVAEPVSARSCSFVGTHEYVSPEVAAGGSHGNAVDWWAFGVFLYELIYGRTPFAASSNETTLRNIIKKPLTFPTTGSSGTLEHHARDLISGLLNKDPTRRLGSKRGSADIKKHPFFKSLNFALIRSLTPPEVPGVVVPQKPKPKPIASSKAKVKPAHSAGFDYF 468
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 6510943 6512897 + Carg25462-RA Car13g00395 159312
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car13g00395 468 MobiDBLite consensus disorder prediction 439 468 - -
Car13g00395 468 MobiDBLite consensus disorder prediction 16 36 - -
Car13g00395 468 Pfam Protein kinase domain 314 420 IPR000719 GO:0004672|GO:0005524|GO:0006468
Car13g00395 468 Pfam Protein kinase domain 86 244 IPR000719 GO:0004672|GO:0005524|GO:0006468
Car13g00395 468 ProSiteProfiles Protein kinase domain profile. 85 420 IPR000719 GO:0004672|GO:0005524|GO:0006468
Car13g00395 468 MobiDBLite consensus disorder prediction 1 36 - -
Car13g00395 468 ProSitePatterns Serine/Threonine protein kinases active-site signature. 217 229 IPR008271 GO:0004672|GO:0006468
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Car13g00395 Car18g00466 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car13g00395 Car-Chr13:6510943 Car18g00579 Car-Chr18:6510796 1.17E-136 dispersed
Car13g00395 Car-Chr13:6510943 Car18g00466 Car-Chr18:3054095 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
89269 PF00069 Pkinase 5.10E-32 CL0016 Car PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car13g00395 - - csv:101208129 738.413