Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car13g00401 ATGAGGCTCTCTGCGGCTGGTTTTAGTCCTCAGCCGCCGGAAGGCGAGAGAAGGGTCCTGAATTCCGAGCTTTGGCATGCGTGCGCGGGTCCTCTTGTTTCTCTGCCGGCTGTTGGCACTCGCGTTGTTTACTTCCCTCAAGGTCATAGTGAGCAGGTTGCTGCATCTACCAACAAAGAGGTCGATGCCCAGATCCCGAATTACCCGAGTTTACCGCCACAACTCATCTGTCAGCTTCATAACCTCACAATGCATGCAGATGCTGAGACAGATGAAGTATATGCACAGATGACTCTGCAACCCTTGAGTGCTCAAGAATTGAAAGAAGCCTACCTTCCAGCTGAGTTGGGGTCTCCAAGTAGGCAGCCAACGAATTACTTTTGCAAAACTTTGACAGCCAGTGATACGAGCACACATGGCGGTTTTTCTGTTCCTCGTCGTGCTGCTGAAAAAGTATTCCCCCCTTTGGACTTCTCCATGCAGCCCCCAGCTCAAGAGCTGATAGCGAGGGACTTGCATGATAATGAATGGAAATTTAGACATATATTTCGTGGCCAGCCTAAAAGACACCTTCTAACAACTGGATGGAGTGTGTTCGTGAGTGCTAAAAGACTTGTTGCTGGTGATGCTGTTCTTTTTATCTGGAATGAGAAGAATCAATTACTCCTCGGAATCAGGCGTGCAAGTCGACCGCAAACCGTGATGCCTTCATCTGTTTTGTCGAGTGATAGTATGCATTTGGGGCTTCTTGCTGCAGCAGCTCATGCAGCTGCTACCAACAGTCGATTTACGATATTTTTTAACCCAAGAGCTAGCCCTTCAGAGTTTGTCATACCACTCACTAAATACGTGAAGGCTGTCTACCATACTCGTGTTTCTGTTGGTATGCGCTTTAGGATGCTGTTTGAAACGGAAGAATCAAGTGTTCGTCGCTACATGGGCACAATCACTGGCATTGGTGACTTGGATCCTGTAAGATGGCAAAACTCACATTGGCGCTCGGTCAAGGTTGGCTGGGACGAATCAACAGCAGGAGAGCGGCAGCCAAGAGTGTCCTTGTGGGAAATTGAACCACTGACAACATTCCCAATGTATCCATCTCCATTTCCACTTCGGCTGAAGCGACCATGGCCAACGGGACTGCCTTCTTTCGGCATCAAGGATAGCGACCTCGGAATGAATTCTCCGTTCATGTGGCTACGGGGAGATAATTGTCTAAACTTTCAGGGAAATGGGGTGTCACCGTGGATGCAGCCAAGGCTTGATACATCCATGATGGCAATGCAACCTGACATGTACCAAGCCATGGCTACTGCAGCTCTTCAGGAGATGAGGGCAATCGATTATTCGAAAATAGCACCTGCATCTGTTCTGCAATTCCAGCAGTCCCAAGGCCTTCCTTGTCAGTCTTCTTCCTTAATGCAGCCTCAGATGATGCATCAGTCTCAACCCCAGCAGGCGTTTCTACAATCCATTCAAGAAAACCAGCAGCATCATCTTCAGCCACAATTGCAGCCCCAGCAATTCAATAATCAACAACAGCAACCAAGGCAGCCACAGCCACAGCCACCGCAACTCGATCATCAGCAGATTCCTTGTACGATACCGGCAGCTATATCTCAGTTTGCTTCATGTTCTCAATCCCAGTTGCCGTCCCTGCAAACCATCCCTTCCCTTTGCCAACAACCGAGTTTTTCTGACTCCAATTGTAACCCTGTAACTACTACTGTTTCCCCATTGCATAGCCTTGCGGGGTCGTCATCTGTTCAAGACGAATCGTCTCAGCTGCTTAACCTTCAAAGAGCAAATTCAATAATTCCTTCAGCTGGTTGGCCAGCAAAGAGAGCTGCTATTGACCCTCTCACTACTGGAGCTTCTCAATATTTTCTGCCTCAAGGGGAAATTTTGGGAACATCACAGAGTAGTATTCCTCAGAATACAGTGGCATTGCCACCCTTCCCTGGAAGGGAGTGTTCTAACGATGACCGAGACGACGGTTCTGATCCACAAAACCATGTTTTATTTGGTGTGAATATAGAGTCTTCATCCCTTCTAATGCAGAATGGGGCGTCACACCTTAGGGGAGTCGGCAACGACAGTGTTTCTACAACTCTACCTTTTTCTTCCAATTATATGAGCACTGCTGGTACCGATTTTTCTGTGAATCCAACCATGACATCCTCAAATTGCATCGACGAGTCGGGTTTCCTGCAGTCTCATGAAAATGTGGGCCAAGTAAACCATCCACCCAATGGAACCTTTGTCAAGGTTCACAAGTCAGGGACCTACAGTAGGTCATTAGATATAACCAAATTCAACAGCTATCCTGAGCTACGCAGCGAGCTTGCTTGCATGTTTGGCCTAGAAGGCGAGTTGGAGGATCCTTTGAGATCAGGCTGGCAGCTTGTATTCGTTGACCGGGAGAATGACGTTCTTCTCCTTGGTGATGGCCCGTGGCCGGAGTTTGTAAGCAGTGTGTGGTGTATCAAAATACTTTCACCAGAAGAAGTTCATGAAATGGGCAAACGAGGTTTAGAACTTCTGAACTCTGTGCCAATTCAGAGGCTCTCAAACAGTACCTGTGACGACTACGGTAGCCGACAGGACTCGAGAAATTTAGTTTCAGGGATAACCTCTGTCGGGCCTCTCGACTACTGA 2658 48.04 MRLSAAGFSPQPPEGERRVLNSELWHACAGPLVSLPAVGTRVVYFPQGHSEQVAASTNKEVDAQIPNYPSLPPQLICQLHNLTMHADAETDEVYAQMTLQPLSAQELKEAYLPAELGSPSRQPTNYFCKTLTASDTSTHGGFSVPRRAAEKVFPPLDFSMQPPAQELIARDLHDNEWKFRHIFRGQPKRHLLTTGWSVFVSAKRLVAGDAVLFIWNEKNQLLLGIRRASRPQTVMPSSVLSSDSMHLGLLAAAAHAAATNSRFTIFFNPRASPSEFVIPLTKYVKAVYHTRVSVGMRFRMLFETEESSVRRYMGTITGIGDLDPVRWQNSHWRSVKVGWDESTAGERQPRVSLWEIEPLTTFPMYPSPFPLRLKRPWPTGLPSFGIKDSDLGMNSPFMWLRGDNCLNFQGNGVSPWMQPRLDTSMMAMQPDMYQAMATAALQEMRAIDYSKIAPASVLQFQQSQGLPCQSSSLMQPQMMHQSQPQQAFLQSIQENQQHHLQPQLQPQQFNNQQQQPRQPQPQPPQLDHQQIPCTIPAAISQFASCSQSQLPSLQTIPSLCQQPSFSDSNCNPVTTTVSPLHSLAGSSSVQDESSQLLNLQRANSIIPSAGWPAKRAAIDPLTTGASQYFLPQGEILGTSQSSIPQNTVALPPFPGRECSNDDRDDGSDPQNHVLFGVNIESSSLLMQNGASHLRGVGNDSVSTTLPFSSNYMSTAGTDFSVNPTMTSSNCIDESGFLQSHENVGQVNHPPNGTFVKVHKSGTYSRSLDITKFNSYPELRSELACMFGLEGELEDPLRSGWQLVFVDRENDVLLLGDGPWPEFVSSVWCIKILSPEEVHEMGKRGLELLNSVPIQRLSNSTCDDYGSRQDSRNLVSGITSVGPLDY 885
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 6546260 6552396 + Carg25456-RA Car13g00401 159318
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car13g00401 885 MobiDBLite consensus disorder prediction 652 671 - -
Car13g00401 885 Pfam AUX/IAA family 748 841 IPR033389 -
Car13g00401 885 ProSiteProfiles PB1 domain profile. 752 836 IPR000270 GO:0005515
Car13g00401 885 Pfam Auxin response factor 253 336 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Car13g00401 885 Pfam B3 DNA binding domain 127 228 IPR003340 GO:0003677
Car13g00401 885 MobiDBLite consensus disorder prediction 506 529 - -
Car13g00401 885 ProSiteProfiles B3 DNA-binding domain profile. 127 229 IPR003340 GO:0003677
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Car03g01289 Car13g00401 CCT
Car13g00401 Car18g00462 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car04g02184 Car-Chr4:17745726 Car13g00401 Car-Chr13:6546260 0 dispersed
Car12g00878 Car-Chr12:8687736 Car13g00401 Car-Chr13:6546260 7.94E-163 dispersed
Car12g01300 Car-Chr12:12002823 Car13g00401 Car-Chr13:6546260 8.97E-33 dispersed
Car13g00401 Car-Chr13:6546260 Car15g00728 Car-Chr15:4049286 0 dispersed
Car16g00472 Car-Chr16:3011343 Car13g00401 Car-Chr13:6546260 7.67E-11 dispersed
Car13g00401 Car-Chr13:6546260 Car18g00462 Car-Chr18:2973511 0 wgd
Car13g00401 Car-Chr13:6546260 Car03g01289 Car-Chr3:9838753 0 wgd
Car13g00401 Car-Chr13:6546260 Car07g00074 Car-Chr7:482444 5.69E-116 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
4526 PF02309 AUX_IAA 8.70E-07 CL0072 Car TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car13g00401 - - csv:101211705 1551.57