Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Car13g00407 | ATGGACGGCGGAGGTGGGAGGTTGAAGGCTTCGAGTTCGAGCAATGGTGGTAGAACCCGCGTGGGAAAATACGAGTTGGGTAGAACCCTAGGTGAAGGAAACTTCGCCAAGGTCAAGTTTGCTCGGAACACGGAGACCGATGACAACGTGGCGATCAAAATTCTCGACAAGGAGAAAGTTCTTAAGCACAAGATGATCAGTCAGATTAAACGCGAGATAGCAACAATGAAATTAATTAGGCATCCAAATGTTATCCGTATGTTTGAGGTGATGGCTAGCAAGACCAAAATATATATTGTGTTGGAGTTTGTCACTGGTGGGGAACTATTTGATAAGATAGTTAGCAGAGGCAGGATGAAGGAAGATGAAGCAAGAAAGTATTTTCAGCAGCTTATTAATGCTGTGGATTATTGTCATAGCAGAGGTGTTTTTCACAGAGATCTAAAGCCAGAGAATTTGCTGCTTGATGCTAATGGCGTTCTTAAAGTTTCAGATTTTGGTTTGAGTGCACTACCTCAGCAAGTTCGGGAAGATGGATTACTGCACACAACTTGTGGAACACCAAACTATGTTGCTCCAGAGGTGATCAATAATAAAGGCTATGACGGGGCAAAGGCTGACTTATGGTCATGTGGTGTAATTCTTTTCGTTTTGATGGCTGGTTATTTACCCTTTGAAGATTCCAACCTGGTTGCGTTGTATAAGAAGGCAATTCCACGTTCATTCTATCATCAGATACACAAGGCTGAGTTCACTTGTCCACCATGGTTCTCTACAAACGCAAAGAAATTAATCAAAAGAATTTTGGATCCCAATCCCGCTACGAGAATTACCATTCCAGAGGTCATTGAAAATGAATGGTTTAGAAAAGGTTATAAGCCCCCCACTTTTGAACAAGCTGATATTAGTCTGGATGATGTGGATGCTATCTTCAATGAAACAGGGGTAAGCAAAGTACAATTGGGTATTTCTAAGCCATCATTTAAGCAGGATCTTCATATTGCCCTTGACATTCAGGTTTCGGGTAATCTCGTAGTGGAAAGGAAAGAGGAAAGACCTGCAGCCCCTCTTACGATGAATGCATTCGAGCTCATCTCTAAATCTCAAGGCCTCAACCTCAGTTCTCTTTTTGAGAAACAAATGGGGCTTGTTAAACGAGAAACAAGGTTCACATCCAATCGACCTGCAAAAGAGATCCTTTCTAAAATTGAGGAAACTGCAGCACCTTTGGGTTTTGATGTGAAGAAAAATAACTACAAGATGAAACTTCAAGGTGAAAAAACAGGTCGTAAAGGGCATTTATCAGTTGCAACAGAGATTTACGAGGTTGCTCCGTCACTGTATATGGTTGAGCTCCGCAAGGCGGGAGGAGATACATTAGAATTTCACAAGTTTTATAAGAACCTCAAAACTGGGCTGAAAGACATTGTTTGGAAACATGAAGAGGATGGAGACGAAGGAGATAGTGGTGCGAGTGTGAATGCGAGTGCGAGTGTCTCGAAGCCGAGGTAA | 1512 | 42.26 | MDGGGGRLKASSSSNGGRTRVGKYELGRTLGEGNFAKVKFARNTETDDNVAIKILDKEKVLKHKMISQIKREIATMKLIRHPNVIRMFEVMASKTKIYIVLEFVTGGELFDKIVSRGRMKEDEARKYFQQLINAVDYCHSRGVFHRDLKPENLLLDANGVLKVSDFGLSALPQQVREDGLLHTTCGTPNYVAPEVINNKGYDGAKADLWSCGVILFVLMAGYLPFEDSNLVALYKKAIPRSFYHQIHKAEFTCPPWFSTNAKKLIKRILDPNPATRITIPEVIENEWFRKGYKPPTFEQADISLDDVDAIFNETGVSKVQLGISKPSFKQDLHIALDIQVSGNLVVERKEERPAAPLTMNAFELISKSQGLNLSSLFEKQMGLVKRETRFTSNRPAKEILSKIEETAAPLGFDVKKNNYKMKLQGEKTGRKGHLSVATEIYEVAPSLYMVELRKAGGDTLEFHKFYKNLKTGLKDIVWKHEEDGDEGDSGASVNASASVSKPR | 503 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
13 | 6590710 | 6597033 | - | Carg25450-RA | Car13g00407 | 159324 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Car13g00407 | 503 | Pfam | NAF domain | 356 | 416 | IPR004041 | GO:0007165 | |
Car13g00407 | 503 | Pfam | Protein kinase domain | 24 | 288 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
Car13g00407 | 503 | MobiDBLite | consensus disorder prediction | 482 | 503 | - | - | |
Car13g00407 | 503 | ProSiteProfiles | NAF domain profile. | 354 | 378 | IPR018451 | GO:0007165 | |
Car13g00407 | 503 | MobiDBLite | consensus disorder prediction | 1 | 23 | - | - | |
Car13g00407 | 503 | ProSitePatterns | Protein kinases ATP-binding region signature. | 30 | 53 | IPR017441 | GO:0005524 | |
Car13g00407 | 503 | ProSiteProfiles | Protein kinase domain profile. | 24 | 288 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
Car13g00407 | 503 | ProSitePatterns | Serine/Threonine protein kinases active-site signature. | 143 | 155 | IPR008271 | GO:0004672|GO:0006468 |
Event-related genes

Select | Gene_1 | Gene_2 | Event_name |
---|---|---|---|
Car03g01283 | Car13g00407 | CCT |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Car06g00831 | Car-Chr6:6542016 | Car13g00407 | Car-Chr13:6590710 | 0 | dispersed | |
Car10g00504 | Car-Chr10:2539479 | Car13g00407 | Car-Chr13:6590710 | 0 | dispersed | |
Car12g00164 | Car-Chr12:943512 | Car13g00407 | Car-Chr13:6590710 | 0 | dispersed | |
Car12g00643 | Car-Chr12:4319502 | Car13g00407 | Car-Chr13:6590710 | 0 | dispersed | |
Car13g00407 | Car-Chr13:6590710 | Car13g00481 | Car-Chr13:7049770 | 1.24E-168 | dispersed | |
Car17g00372 | Car-Chr17:2376557 | Car13g00407 | Car-Chr13:6590710 | 1.17E-106 | dispersed | |
Car02g00982 | Car-Chr2:6959053 | Car13g00407 | Car-Chr13:6590710 | 0 | transposed | |
Car13g00407 | Car-Chr13:6590710 | Car03g01283 | Car-Chr3:9792705 | 0 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
89270 | PF00069 | Pkinase | 4.70E-75 | CL0016 | Car | PK |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Car13g00407 | - | - | csv:101222334 | 843.958 |