Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car13g00407 ATGGACGGCGGAGGTGGGAGGTTGAAGGCTTCGAGTTCGAGCAATGGTGGTAGAACCCGCGTGGGAAAATACGAGTTGGGTAGAACCCTAGGTGAAGGAAACTTCGCCAAGGTCAAGTTTGCTCGGAACACGGAGACCGATGACAACGTGGCGATCAAAATTCTCGACAAGGAGAAAGTTCTTAAGCACAAGATGATCAGTCAGATTAAACGCGAGATAGCAACAATGAAATTAATTAGGCATCCAAATGTTATCCGTATGTTTGAGGTGATGGCTAGCAAGACCAAAATATATATTGTGTTGGAGTTTGTCACTGGTGGGGAACTATTTGATAAGATAGTTAGCAGAGGCAGGATGAAGGAAGATGAAGCAAGAAAGTATTTTCAGCAGCTTATTAATGCTGTGGATTATTGTCATAGCAGAGGTGTTTTTCACAGAGATCTAAAGCCAGAGAATTTGCTGCTTGATGCTAATGGCGTTCTTAAAGTTTCAGATTTTGGTTTGAGTGCACTACCTCAGCAAGTTCGGGAAGATGGATTACTGCACACAACTTGTGGAACACCAAACTATGTTGCTCCAGAGGTGATCAATAATAAAGGCTATGACGGGGCAAAGGCTGACTTATGGTCATGTGGTGTAATTCTTTTCGTTTTGATGGCTGGTTATTTACCCTTTGAAGATTCCAACCTGGTTGCGTTGTATAAGAAGGCAATTCCACGTTCATTCTATCATCAGATACACAAGGCTGAGTTCACTTGTCCACCATGGTTCTCTACAAACGCAAAGAAATTAATCAAAAGAATTTTGGATCCCAATCCCGCTACGAGAATTACCATTCCAGAGGTCATTGAAAATGAATGGTTTAGAAAAGGTTATAAGCCCCCCACTTTTGAACAAGCTGATATTAGTCTGGATGATGTGGATGCTATCTTCAATGAAACAGGGGTAAGCAAAGTACAATTGGGTATTTCTAAGCCATCATTTAAGCAGGATCTTCATATTGCCCTTGACATTCAGGTTTCGGGTAATCTCGTAGTGGAAAGGAAAGAGGAAAGACCTGCAGCCCCTCTTACGATGAATGCATTCGAGCTCATCTCTAAATCTCAAGGCCTCAACCTCAGTTCTCTTTTTGAGAAACAAATGGGGCTTGTTAAACGAGAAACAAGGTTCACATCCAATCGACCTGCAAAAGAGATCCTTTCTAAAATTGAGGAAACTGCAGCACCTTTGGGTTTTGATGTGAAGAAAAATAACTACAAGATGAAACTTCAAGGTGAAAAAACAGGTCGTAAAGGGCATTTATCAGTTGCAACAGAGATTTACGAGGTTGCTCCGTCACTGTATATGGTTGAGCTCCGCAAGGCGGGAGGAGATACATTAGAATTTCACAAGTTTTATAAGAACCTCAAAACTGGGCTGAAAGACATTGTTTGGAAACATGAAGAGGATGGAGACGAAGGAGATAGTGGTGCGAGTGTGAATGCGAGTGCGAGTGTCTCGAAGCCGAGGTAA 1512 42.26 MDGGGGRLKASSSSNGGRTRVGKYELGRTLGEGNFAKVKFARNTETDDNVAIKILDKEKVLKHKMISQIKREIATMKLIRHPNVIRMFEVMASKTKIYIVLEFVTGGELFDKIVSRGRMKEDEARKYFQQLINAVDYCHSRGVFHRDLKPENLLLDANGVLKVSDFGLSALPQQVREDGLLHTTCGTPNYVAPEVINNKGYDGAKADLWSCGVILFVLMAGYLPFEDSNLVALYKKAIPRSFYHQIHKAEFTCPPWFSTNAKKLIKRILDPNPATRITIPEVIENEWFRKGYKPPTFEQADISLDDVDAIFNETGVSKVQLGISKPSFKQDLHIALDIQVSGNLVVERKEERPAAPLTMNAFELISKSQGLNLSSLFEKQMGLVKRETRFTSNRPAKEILSKIEETAAPLGFDVKKNNYKMKLQGEKTGRKGHLSVATEIYEVAPSLYMVELRKAGGDTLEFHKFYKNLKTGLKDIVWKHEEDGDEGDSGASVNASASVSKPR 503
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 6590710 6597033 - Carg25450-RA Car13g00407 159324
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car13g00407 503 Pfam NAF domain 356 416 IPR004041 GO:0007165
Car13g00407 503 Pfam Protein kinase domain 24 288 IPR000719 GO:0004672|GO:0005524|GO:0006468
Car13g00407 503 MobiDBLite consensus disorder prediction 482 503 - -
Car13g00407 503 ProSiteProfiles NAF domain profile. 354 378 IPR018451 GO:0007165
Car13g00407 503 MobiDBLite consensus disorder prediction 1 23 - -
Car13g00407 503 ProSitePatterns Protein kinases ATP-binding region signature. 30 53 IPR017441 GO:0005524
Car13g00407 503 ProSiteProfiles Protein kinase domain profile. 24 288 IPR000719 GO:0004672|GO:0005524|GO:0006468
Car13g00407 503 ProSitePatterns Serine/Threonine protein kinases active-site signature. 143 155 IPR008271 GO:0004672|GO:0006468
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Car03g01283 Car13g00407 CCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car06g00831 Car-Chr6:6542016 Car13g00407 Car-Chr13:6590710 0 dispersed
Car10g00504 Car-Chr10:2539479 Car13g00407 Car-Chr13:6590710 0 dispersed
Car12g00164 Car-Chr12:943512 Car13g00407 Car-Chr13:6590710 0 dispersed
Car12g00643 Car-Chr12:4319502 Car13g00407 Car-Chr13:6590710 0 dispersed
Car13g00407 Car-Chr13:6590710 Car13g00481 Car-Chr13:7049770 1.24E-168 dispersed
Car17g00372 Car-Chr17:2376557 Car13g00407 Car-Chr13:6590710 1.17E-106 dispersed
Car02g00982 Car-Chr2:6959053 Car13g00407 Car-Chr13:6590710 0 transposed
Car13g00407 Car-Chr13:6590710 Car03g01283 Car-Chr3:9792705 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
89270 PF00069 Pkinase 4.70E-75 CL0016 Car PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car13g00407 - - csv:101222334 843.958