Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car13g00439 ATGCCATGTTCTTCCTGTACAAAGCACTTCTTCCAGCGCTTCTTCACCGACGAGTTCCAAACCAACGGCGCTCTTCAAAGCACTTTCTTGTCCCCTGACCTGTTGCCATCTCTCGGCGCCACCATCAACCAATCCACCAAGCTTCGTAAACACATCATTTCCCCTTTCAACCCTCGTTATCGAGCATGGGAGATGTGGCTGGTGGCTCTAGTCATTTACTCTGCTTGGATTTGTCCTTTCGAATTCGCATTCCTTCCCTACAAACAAAATGCTCTGTTCATCATAGATCACTTCGTCAATGCCTTCTTCGCCGTTGATATCGTTTTGACTTTCTTCGTCGCCTATCTTGACTCTCAATCTTATCTTCTCGTTGACCACCCCAAGAAAATTGCAGTCAGGTATTTATCGACTTGGTTTATTTTCGACGTTTGTTCGACGGCGCCATTGCAGTCGATTAGTTTCTTGTTCACCAATCAAAGTGGGGAAGTTGGGTTTAAGCTTCTGAATATGCTCCGGCTATGGCGGCTCCGACGGGTCAGCTCTCTCTTTGCAAGGCTTGAAAAGGACATCAGGTTCAATTATTTCTGGACCCGTTGCACAAAGTTGATTTCTGTAACGTTATTTGCAGTACATTGTGCTGGGTGCTTCAATTACTTAATAGCCGACAAATATCCGGACCCAAAACGAACATGGATTGGTGCAGTGAACCCAAATTTCAAGGAAGATAGCCTATGGAACCTTTACATTACTGCAATTTACTGGTCCATTACCACCTTAACCACCACTGGCTATGGCGATCTCCATGCAGAGAACCCCAGAGAAATGCTTTTTGACATATTTTACATGCTCTTCAACTTAGGCTTGACTTCTTATCTCATCGGTAACATGACGAATCTCGTCGTCCATTGGACGAGTCGCACTCGAAACTTCAGGGATTCGGTTCGAGCTGCCACGGAGTTCGCGTCGAGAAATCAGCTACCGAACCCCATACAAGACCAGATGCTGTCTCATATATGTCTCAAGTTTAGAACCGAAGGGCTGAAGCAGCAAGACACATTGAATGACCTTCCAAAGGCCATTAGAGTCTCCATAGCTCACTATCTCTTTTATCCCATTGTTCAGAAGGCCTACCTCTTTGAAGGAGTTTCTCATGACTTCCTTTTCCAATTGGTCTCAGATGTGGAGGCTGAGTATTTCCCACCAAAGGAAGATGTTATACTCCAAAGTGAAGCTCAAACGGATCTCTATATATTGGTTTCAGGCAGTGTGGATTTAATATCCAAAATTGATGGGCATGATCAAGTTATTGGAAGAGCAACAGGTGGAGATACATTCGGAGAATTTGGAGTTTTATGTCAAAAGCCGCAGCCTTTGACAGTTAGAACAACAAATCTTTCGCAAATTTTAAGGATCAAGAGAGCTTCTTTGTTGTATATTATTCAATCAAACACAGATGATGGGAATATTATCATGAACAATTTTTTCATGAAAATGAAGGAATATGAAGGAATAATGGGGGATGTTTGGTGTGATGGTGGGCTAAAGAAGCTTGGAGATGAGGATGAAAATTTGGGATGCTCAGATGAACATAGAATTGAGTTTGATGAACAGCTTGAAGGAGGTGAAAACGACATTAATTTGTCTCATAACAACAAGTTACTAGCAAGAGATGGAGGTTTTCGGTCGGATTTTATTAGTTCCTCGGTAGAAAACTTGCCCACGAGCTCTTACTCGAATGTCTCGAGACAAATCAAGAAAAGGGTTACTGTATTTATACAGCCTCGAGATAGAAGCAAGGTTGAAAGTCGATATGGAAAGTTAATGCTTCTCCCGAATTCGATCGAAGAGCTCTGTAAAGTTGCTGGTGAGAAGTTTGGAAGGGAAATGCCGACAAAAGTGATGAATGCAGATAATGCAGAAATTGATGATATAAATGTGATTCGTGACGGTGACCATTTGTTTCTTCTTTATAATAATGATATTGAAAAATGTGGTCTCAAATGA 2004 42.27 MPCSSCTKHFFQRFFTDEFQTNGALQSTFLSPDLLPSLGATINQSTKLRKHIISPFNPRYRAWEMWLVALVIYSAWICPFEFAFLPYKQNALFIIDHFVNAFFAVDIVLTFFVAYLDSQSYLLVDHPKKIAVRYLSTWFIFDVCSTAPLQSISFLFTNQSGEVGFKLLNMLRLWRLRRVSSLFARLEKDIRFNYFWTRCTKLISVTLFAVHCAGCFNYLIADKYPDPKRTWIGAVNPNFKEDSLWNLYITAIYWSITTLTTTGYGDLHAENPREMLFDIFYMLFNLGLTSYLIGNMTNLVVHWTSRTRNFRDSVRAATEFASRNQLPNPIQDQMLSHICLKFRTEGLKQQDTLNDLPKAIRVSIAHYLFYPIVQKAYLFEGVSHDFLFQLVSDVEAEYFPPKEDVILQSEAQTDLYILVSGSVDLISKIDGHDQVIGRATGGDTFGEFGVLCQKPQPLTVRTTNLSQILRIKRASLLYIIQSNTDDGNIIMNNFFMKMKEYEGIMGDVWCDGGLKKLGDEDENLGCSDEHRIEFDEQLEGGENDINLSHNNKLLARDGGFRSDFISSSVENLPTSSYSNVSRQIKKRVTVFIQPRDRSKVESRYGKLMLLPNSIEELCKVAGEKFGREMPTKVMNADNAEIDDINVIRDGDHLFLLYNNDIEKCGLK 667
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 6831686 6835176 - Carg19925-RA Car13g00439 159356
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car13g00439 667 Pfam KHA, dimerisation domain of potassium ion channel 586 655 IPR021789 -
Car13g00439 667 Pfam Ion transport protein 61 307 IPR005821 GO:0005216|GO:0006811|GO:0016020|GO:0055085
Car13g00439 667 ProSiteProfiles cAMP/cGMP binding motif profile. 378 497 IPR000595 -
Car13g00439 667 Pfam Cyclic nucleotide-binding domain 398 483 IPR000595 -
Car13g00439 667 ProSiteProfiles KHA domain profile. 587 667 IPR021789 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car01g01171 Car-Chr1:10937845 Car13g00439 Car-Chr13:6831686 0 dispersed
Car04g00499 Car-Chr4:2822223 Car13g00439 Car-Chr13:6831686 2.20E-177 dispersed
Car10g00536 Car-Chr10:2688737 Car13g00439 Car-Chr13:6831686 1.34E-07 dispersed
Car11g00432 Car-Chr11:2414856 Car13g00439 Car-Chr13:6831686 5.50E-07 dispersed
Car13g00439 Car-Chr13:6831686 Car16g00344 Car-Chr16:2125422 1.94E-08 dispersed
Car13g00439 Car-Chr13:6831686 Car18g00432 Car-Chr18:2735377 2.08E-14 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car13g00439 K21867 - csv:101215858 1115.14