Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car13g00449 GATGAATTTACTGATGGAGATAAACCTCCAGCTTCCTCCTTCGTTTCTCTGAACAACCAATCCAACAATTTCACTTCAATCCTTGCGGATACACTCATGGAGAATAGTCGGGGAGGAGGAAGAGGGATGGCGGCGTTTTCGTCCTCGGCGGAAAGCAATACCAGGGCTCGTCCGAGCAATACAGCTAGCACCGACAACAGAGCTGCGGCACTTGTGCAATACAATGCTGATGCTGGGCTTTTGAACAAGTTTGAGCAATCGGATGCCTCTGGTGAGTCTTTTAACTATTCGAGATCAGTTCTTGAAGCTCCACAGTCTGTACCTGAAGAACAAATTACTGCTTATCTGTCTAAGATTCAGAGGGGTGGAATGGTTCAGCCGTTTGGTTGTTTGCTTGCGATTGAAGAATCTAGTCTTAAGATTATTAGCTATAGTGAGAATTGTTTTGAATTATTGGGGATAAATGATCAGTTTGAGTCGGCACCGGGGAAGGGTCTAATTGGGGTTCATATAAGAGCTCTGTTTACGCCTTCCTCCGGTGCTTCTTTGGCTAAAGCGGCTTCATCCAGGGAGATTTCGCTGTTGAATCCTGTTTGGGTTTATTCTAGGAATACCCAGAAGCCATTTTATGCCATACTGCATAGGATTGATGTGGGGATTGTAATTGATTTGGAGCCTGCACGGTCTGTTGATCCTGCACTGTCGCTTGCCGGCGCCGTGCATTCGCAGAAACTTGCGGTTCGAGCCATTTCCAGGTTGCAGGCTCTACCTGGTGGTGATATTGGTGTTTTATGTGATACGGTTGTGGAAGATGTTCAGAAGCTTACAGGGTATGATAGAGTGATGGTGTATAAGTTCCATGATGATGAACATGGTGAAGTAGTGTCAGAAATCAGAAGGTCGGACTTGGAGCCATATCTCGGTTTGCACTATCCTGCCATTGATATACCCCAAGCTGCTCGTTTCTTGTTCAAGCAGAACCGCGTTAGGATGATTTGCGATTGCCACGCGAAGCCTGTGCAGGTCATTCAAAGTGATGAGCTAAAGCAGCCTCTTTGTTTGGTTAATTCAACACTTCGATCACCACATAGTTGTCATTTGCAGTACATGGCAAATATGGGTTCCATAGCCTCATTGGCAATGGCAGTAATCATGAACAGTGATGACTCTCCAACAAGGTTATGGGGCCTGGTAGTGTGCCACCATACTTCACCACGATATGTCCCTTTCCCACTTCGTTATGCTTGCGAGTTTCTCATGCAGGCTTTCGGGCTGCAACTTTATATGGAGCTTCAATTGGCATTACAAATAACAGAGAAAAAGGTTCTCAAGACACAAACCTTACTCTGTGACATGCTCCTCCGAGGCTCCCCTTATGCATTGCTGACCCAGTCACCTAGTATAAAGGATCTCGTGAAGTGTGATGGCGCTGCATTGTACTATCAGGGGGCATGCTGTCTACTAGGTGTAACTCCAACTGAAGCCCAAGTTAAAAACCTTGTCGAGTGGATACTCAATAACCATGGAGATTCTACAGGACTGAGCACGGATAGCTTGGCTGATGCTGGCTATCCCGAAGCTGCTTCACTAGGTGATGCAATATGTGGTATGACTGCTGCAAGAATTAGTTCAAAAGATTTCTTATTCTGGTTCCGTTCCCATGCCGCAAAAGAAATCCAATGGGGAGGAGCCAAGCATCATCCAGATGATAAGGATGATGGTGGAAGAATGCACCCAAGGTCATCATTTAAAGCATTTCTTGAAGTTGCAAAGAGTAAAAGTATGTCATGGGAAGCTCAAGAAATAAATGCCATTCACTCATTGCAGCTTATTATGAGGGAGTCTTTCTCGAGCGCTAGAGACAGTGATTCGAAGGCAGAAATGTCTGTCCAGCAGAGTGATACTGTGTCTCAGGACATCGGCGAACTCAGTTCAGTAGCTTGTGAAATGGTTAGATTAATTGAAACAGCAACCGCTCCAATTTTTGGGGTTGACTCAACTGGTGTGATCAATGGATGGAATGCTAAAATAGCTGAACTCGTAGGATTACAAACTGGAGAAGCTTTGGGGAGATCTCTGGATGAAATCGTTCATGACGATTCACGTGGAACTGTTGGAAATTTAGTTCTTCATGCTCTGCAAGGTGTGGAAGACAAAAATGTGGAGTTAAAACTGAGAAAGTTTGGAACTGATAAAGAAAACTCTGCTGTGTATATTGTAGTTAATGCTTGCACAAGTAGGAATTACACAAATAAAGTTATTGGGGTTTGCTTTGTTGGGCAAGATATAACGTCGGAGAAGGGCATGAGGGATAGATTTATCCGTCTGCAGGGAGATTATAGGACAATTATTGAAAGTCTGAGTCCATTGATTCCACCAATTTTCGTTTCGGACGAGAATGGTTACTGCTGTGAATGGACTGCTGCCATGGAGAAGCTTTCTGGTTGGAGTAAAGATGAAGTTATAGGAAAAATGCTTGTAGGGGAGATTTTTGGGAACTTCTGTAGGTTGAAAGATCTAGATACCCTCACTAGGTTTATGATCCTATTATATCAAGGCATTGGTGGTGAACAAACTGAGAAGTTTCCATTAGGATTTTTCAATAAGAATGGTAACTATATGGAGGTGCTTTTAACATCAAACAAAAGGACTGATGCAGAAGGAAATGTCATTGGTTGTATCTGTTTCCTGCAAGTTGTTGAGCCAAACTTGCAAGGGGTCTCTGAAGGACTCGGCCTGGGCGAAAGACGGGGCAATTTGCAGCTTAAGGAGTTGACTTACTTAAAGCGGGAGATGAAAAATCCTTTAAATGGCATCAAATTTACTCATGAACTCCTTGTAAATTCTGGCATTACAGACAACCAGAAACTCTTCCTTGTTACTAGTGATGCGTGCGAGAGACAGATCATGGCGATCATTGAGGATATGGACTTCAGAAGTTTAGAAGTGGGCCAAGTACAGATAAACAGAGACGAGTTTGTCCTCGGGAGTGTTCTGGATGCAATTATCTGTCAAATCATGATTGTTGTCAGAGAGAAGAACATACAACTTTTTCATGAAATTCCAGAAGAAATCAAAGTGTTAACTCTTTGTGGCGATCAAATTAAACTTCAGCTGGTTTTATCAGATTTCTTACTTAGCGTAGTGCAGAACACGCCTGCTCTGGACGGTTGGGTTGAAATCAAAATTTCAGCTGGTTTGAAGCTTATACAAGATGGAAATGAACATATTCACTTGCAGATCAGAATGTCACATCCAGGTCAAGGTCTGCCTCCTGAACTAATCCAAGATATGGTTGGAGGAGGACAACAGTGGAGTTCAGAGCAAGGCCTCGCCCTAAATCTGTCACGCAGACTTCTCAATAAATTGAACGGTAATGTCTGCTACGTTAGAGAGCAAACTAAATGCTACTTCCTCATTGATCTCGAACTCAAGTTAAGGCGCTCGAGGGGGTCGCTGGAAGCCACTACAAGCCAAAGGACTTGA 3486 43.72 DEFTDGDKPPASSFVSLNNQSNNFTSILADTLMENSRGGGRGMAAFSSSAESNTRARPSNTASTDNRAAALVQYNADAGLLNKFEQSDASGESFNYSRSVLEAPQSVPEEQITAYLSKIQRGGMVQPFGCLLAIEESSLKIISYSENCFELLGINDQFESAPGKGLIGVHIRALFTPSSGASLAKAASSREISLLNPVWVYSRNTQKPFYAILHRIDVGIVIDLEPARSVDPALSLAGAVHSQKLAVRAISRLQALPGGDIGVLCDTVVEDVQKLTGYDRVMVYKFHDDEHGEVVSEIRRSDLEPYLGLHYPAIDIPQAARFLFKQNRVRMICDCHAKPVQVIQSDELKQPLCLVNSTLRSPHSCHLQYMANMGSIASLAMAVIMNSDDSPTRLWGLVVCHHTSPRYVPFPLRYACEFLMQAFGLQLYMELQLALQITEKKVLKTQTLLCDMLLRGSPYALLTQSPSIKDLVKCDGAALYYQGACCLLGVTPTEAQVKNLVEWILNNHGDSTGLSTDSLADAGYPEAASLGDAICGMTAARISSKDFLFWFRSHAAKEIQWGGAKHHPDDKDDGGRMHPRSSFKAFLEVAKSKSMSWEAQEINAIHSLQLIMRESFSSARDSDSKAEMSVQQSDTVSQDIGELSSVACEMVRLIETATAPIFGVDSTGVINGWNAKIAELVGLQTGEALGRSLDEIVHDDSRGTVGNLVLHALQGVEDKNVELKLRKFGTDKENSAVYIVVNACTSRNYTNKVIGVCFVGQDITSEKGMRDRFIRLQGDYRTIIESLSPLIPPIFVSDENGYCCEWTAAMEKLSGWSKDEVIGKMLVGEIFGNFCRLKDLDTLTRFMILLYQGIGGEQTEKFPLGFFNKNGNYMEVLLTSNKRTDAEGNVIGCICFLQVVEPNLQGVSEGLGLGERRGNLQLKELTYLKREMKNPLNGIKFTHELLVNSGITDNQKLFLVTSDACERQIMAIIEDMDFRSLEVGQVQINRDEFVLGSVLDAIICQIMIVVREKNIQLFHEIPEEIKVLTLCGDQIKLQLVLSDFLLSVVQNTPALDGWVEIKISAGLKLIQDGNEHIHLQIRMSHPGQGLPPELIQDMVGGGQQWSSEQGLALNLSRRLLNKLNGNVCYVREQTKCYFLIDLELKLRRSRGSLEATTSQRT 1161
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 6899041 6905753 + Carg19914-RA Car13g00449 159366

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Car13g00449 1161 Pfam PAS fold 114 227 IPR013654 GO:0006355
Car13g00449 1161 ProSiteProfiles PAS repeat profile. 646 716 IPR000014 -
Car13g00449 1161 ProSiteProfiles Phytochrome chromophore attachment site domain profile. 260 421 IPR016132 -
Car13g00449 1161 Pfam PAS fold 779 899 IPR013767 GO:0006355
Car13g00449 1161 Pfam PAS fold 649 763 IPR013767 GO:0006355
Car13g00449 1161 MobiDBLite consensus disorder prediction 39 65 - -
Car13g00449 1161 Pfam GAF domain 260 431 IPR003018 GO:0005515
Car13g00449 1161 ProSiteProfiles Histidine kinase domain profile. 927 1146 IPR005467 -
Car13g00449 1161 ProSitePatterns Phytochrome chromophore attachment site signature. 360 369 IPR013516 -
Car13g00449 1161 ProSiteProfiles PAS repeat profile. 779 831 IPR000014 -
Car13g00449 1161 Pfam Phytochrome region 444 618 IPR013515 GO:0006355|GO:0009584
Car13g00449 1161 ProSiteProfiles PAC domain profile. 719 775 IPR000700 -
Car13g00449 1161 MobiDBLite consensus disorder prediction 46 65 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car13g00449 K12123 PHYE; phytochrome E - csv:101214900 1927.91
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Car13g00449 Car18g00423 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car06g01329 Car-Chr6:9492019 Car13g00449 Car-Chr13:6899041 0 dispersed
Car13g00449 Car-Chr13:6899041 Car14g01399 Car-Chr14:11804661 0 dispersed
Car13g00449 Car-Chr13:6899041 Car18g00423 Car-Chr18:2652153 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi10g343 . . . . . . Bma14g00963 Bma01g01487 . Cmo18g00427 . . . . . Cpe09g00775 . . . . . . . . . . . . . . . . . . . . . Chy12g00013 . . . . . Bpe02g00962 . . . Sed01g2202 . . Cma13g00567 Cma18g00452 Car13g00449 Car18g00423 . Cpe20g00493 Bhi08g02111 Tan05g2567 Cmetu12g0178 Lac10g1014 Hepe07g1806 . . Cla03g00672 Cam03g0721 Cec03g0697 Cco03g0733 Clacu03g0719 Cmu03g1310 Cre03g1005 Lsi02g00857 Csa01g02269 . Cme12g01234
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Car16g01173 . 31 1206 Histidine Kinase Gene Family AT2G17820 65.6 0.0e+00 1466.1
Car06g00101 . 5 1218 Histidine Kinase Gene Family AT2G17820 63.1 0.0e+00 1424.1
Car04g02077 CST 19 981 Histidine Kinase Gene Family AT2G01830 72.0 0.0e+00 1324.3
Car04g00025 . 28 1008 Histidine Kinase Gene Family AT2G01830 70.5 0.0e+00 1321.6
Car15g00833 CST 20 1012 Histidine Kinase Gene Family AT2G01830 69.7 0.0e+00 1289.2
Car11g01462 . 280 1230 Histidine Kinase Gene Family AT2G01830 53.3 2.9e-274 942.2
Car20g00576 . 302 1245 Histidine Kinase Gene Family AT2G01830 53.4 5.4e-273 937.9
Car07g00626 . 283 1238 Histidine Kinase Gene Family AT2G01830 51.7 3.4e-267 918.7
Car08g00164 . 51 986 Histidine Kinase Gene Family AT2G01830 52.3 2.2e-266 916.0
Car01g01298 CCT 1 1000 Histidine Kinase Gene Family AT5G10720 57.2 1.7e-291 999.2
Car09g00334 CCT 1 996 Histidine Kinase Gene Family AT5G10720 56.6 1.9e-290 995.7
Car05g00833 . 117 1139 Histidine Kinase Gene Family AT1G09570 74.0 0.0e+00 1654.8
Car12g00675 . 24 1118 Histidine Kinase Gene Family AT1G09570 71.5 0.0e+00 1608.6
Car19g00664 . 18 1111 Histidine Kinase Gene Family AT1G09570 54.6 0.0e+00 1209.5
Car14g01399 CST 35 1120 Histidine Kinase Gene Family AT1G09570 54.3 0.0e+00 1194.1
Car06g01329 CST 31 1126 Histidine Kinase Gene Family AT1G09570 52.8 0.0e+00 1162.1
Car14g01399 CST 13 1061 Histidine Kinase Gene Family AT2G18790 79.0 0.0e+00 1669.1
Car06g01329 CST 30 1067 Histidine Kinase Gene Family AT2G18790 77.3 0.0e+00 1613.6
Car18g00423 CST 31 1051 Histidine Kinase Gene Family AT2G18790 59.4 0.0e+00 1228.8
Car13g00449 CST 63 1082 Histidine Kinase Gene Family AT2G18790 59.5 0.0e+00 1226.1
Car19g00664 . 26 1068 Histidine Kinase Gene Family AT2G18790 52.2 0.0e+00 1079.3
Car12g00675 . 28 1052 Histidine Kinase Gene Family AT2G18790 50.9 2.0e-305 1045.8
Car05g00833 . 137 1073 Histidine Kinase Gene Family AT2G18790 55.3 2.1e-299 1025.8
Car19g00664 . 12 1115 Histidine Kinase Gene Family AT5G35840 60.9 0.0e+00 1365.9
Car14g01399 CST 21 1122 Histidine Kinase Gene Family AT5G35840 52.8 0.0e+00 1148.7
Car06g01329 CST 31 1128 Histidine Kinase Gene Family AT5G35840 51.7 0.0e+00 1122.5
Car12g00675 . 24 1109 Histidine Kinase Gene Family AT5G35840 50.4 2.5e-313 1072.0
Car14g01399 CST 30 1122 Histidine Kinase Gene Family AT4G16250 77.1 0.0e+00 1708.7
Car06g01329 CST 34 1128 Histidine Kinase Gene Family AT4G16250 74.3 0.0e+00 1651.7
Car13g00449 CST 64 1144 Histidine Kinase Gene Family AT4G16250 57.8 0.0e+00 1265.8
Car18g00423 CST 38 1113 Histidine Kinase Gene Family AT4G16250 57.4 0.0e+00 1259.2
Car19g00664 . 26 1114 Histidine Kinase Gene Family AT4G16250 51.9 0.0e+00 1106.7
Car12g00675 . 27 1113 Histidine Kinase Gene Family AT4G16250 50.7 0.0e+00 1080.5
Car13g00449 CST 47 1145 Histidine Kinase Gene Family AT4G18130 63.2 0.0e+00 1371.3
Car18g00423 CST 15 1130 Histidine Kinase Gene Family AT4G18130 61.2 0.0e+00 1349.0
Car14g01399 CST 38 1120 Histidine Kinase Gene Family AT4G18130 58.9 0.0e+00 1273.8
Car06g01329 CST 42 1126 Histidine Kinase Gene Family AT4G18130 57.4 0.0e+00 1257.3
Car05g00833 . 140 1073 Histidine Kinase Gene Family AT4G18130 51.0 7.7e-262 901.0
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009148 1 1 1 2 1 1 2 1 1 1 1 1 2 1 1 1 1 0 2 1 1 1 1 1 1 1 1 2 1 1 34
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Car13g00449 Car_Chr13 FPKM 6.603921 7.753355 10.249743 9.786181 7.691939 8.981025 7.94989 5.913239 6.344157 5.628698