Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car13g00449 GATGAATTTACTGATGGAGATAAACCTCCAGCTTCCTCCTTCGTTTCTCTGAACAACCAATCCAACAATTTCACTTCAATCCTTGCGGATACACTCATGGAGAATAGTCGGGGAGGAGGAAGAGGGATGGCGGCGTTTTCGTCCTCGGCGGAAAGCAATACCAGGGCTCGTCCGAGCAATACAGCTAGCACCGACAACAGAGCTGCGGCACTTGTGCAATACAATGCTGATGCTGGGCTTTTGAACAAGTTTGAGCAATCGGATGCCTCTGGTGAGTCTTTTAACTATTCGAGATCAGTTCTTGAAGCTCCACAGTCTGTACCTGAAGAACAAATTACTGCTTATCTGTCTAAGATTCAGAGGGGTGGAATGGTTCAGCCGTTTGGTTGTTTGCTTGCGATTGAAGAATCTAGTCTTAAGATTATTAGCTATAGTGAGAATTGTTTTGAATTATTGGGGATAAATGATCAGTTTGAGTCGGCACCGGGGAAGGGTCTAATTGGGGTTCATATAAGAGCTCTGTTTACGCCTTCCTCCGGTGCTTCTTTGGCTAAAGCGGCTTCATCCAGGGAGATTTCGCTGTTGAATCCTGTTTGGGTTTATTCTAGGAATACCCAGAAGCCATTTTATGCCATACTGCATAGGATTGATGTGGGGATTGTAATTGATTTGGAGCCTGCACGGTCTGTTGATCCTGCACTGTCGCTTGCCGGCGCCGTGCATTCGCAGAAACTTGCGGTTCGAGCCATTTCCAGGTTGCAGGCTCTACCTGGTGGTGATATTGGTGTTTTATGTGATACGGTTGTGGAAGATGTTCAGAAGCTTACAGGGTATGATAGAGTGATGGTGTATAAGTTCCATGATGATGAACATGGTGAAGTAGTGTCAGAAATCAGAAGGTCGGACTTGGAGCCATATCTCGGTTTGCACTATCCTGCCATTGATATACCCCAAGCTGCTCGTTTCTTGTTCAAGCAGAACCGCGTTAGGATGATTTGCGATTGCCACGCGAAGCCTGTGCAGGTCATTCAAAGTGATGAGCTAAAGCAGCCTCTTTGTTTGGTTAATTCAACACTTCGATCACCACATAGTTGTCATTTGCAGTACATGGCAAATATGGGTTCCATAGCCTCATTGGCAATGGCAGTAATCATGAACAGTGATGACTCTCCAACAAGGTTATGGGGCCTGGTAGTGTGCCACCATACTTCACCACGATATGTCCCTTTCCCACTTCGTTATGCTTGCGAGTTTCTCATGCAGGCTTTCGGGCTGCAACTTTATATGGAGCTTCAATTGGCATTACAAATAACAGAGAAAAAGGTTCTCAAGACACAAACCTTACTCTGTGACATGCTCCTCCGAGGCTCCCCTTATGCATTGCTGACCCAGTCACCTAGTATAAAGGATCTCGTGAAGTGTGATGGCGCTGCATTGTACTATCAGGGGGCATGCTGTCTACTAGGTGTAACTCCAACTGAAGCCCAAGTTAAAAACCTTGTCGAGTGGATACTCAATAACCATGGAGATTCTACAGGACTGAGCACGGATAGCTTGGCTGATGCTGGCTATCCCGAAGCTGCTTCACTAGGTGATGCAATATGTGGTATGACTGCTGCAAGAATTAGTTCAAAAGATTTCTTATTCTGGTTCCGTTCCCATGCCGCAAAAGAAATCCAATGGGGAGGAGCCAAGCATCATCCAGATGATAAGGATGATGGTGGAAGAATGCACCCAAGGTCATCATTTAAAGCATTTCTTGAAGTTGCAAAGAGTAAAAGTATGTCATGGGAAGCTCAAGAAATAAATGCCATTCACTCATTGCAGCTTATTATGAGGGAGTCTTTCTCGAGCGCTAGAGACAGTGATTCGAAGGCAGAAATGTCTGTCCAGCAGAGTGATACTGTGTCTCAGGACATCGGCGAACTCAGTTCAGTAGCTTGTGAAATGGTTAGATTAATTGAAACAGCAACCGCTCCAATTTTTGGGGTTGACTCAACTGGTGTGATCAATGGATGGAATGCTAAAATAGCTGAACTCGTAGGATTACAAACTGGAGAAGCTTTGGGGAGATCTCTGGATGAAATCGTTCATGACGATTCACGTGGAACTGTTGGAAATTTAGTTCTTCATGCTCTGCAAGGTGTGGAAGACAAAAATGTGGAGTTAAAACTGAGAAAGTTTGGAACTGATAAAGAAAACTCTGCTGTGTATATTGTAGTTAATGCTTGCACAAGTAGGAATTACACAAATAAAGTTATTGGGGTTTGCTTTGTTGGGCAAGATATAACGTCGGAGAAGGGCATGAGGGATAGATTTATCCGTCTGCAGGGAGATTATAGGACAATTATTGAAAGTCTGAGTCCATTGATTCCACCAATTTTCGTTTCGGACGAGAATGGTTACTGCTGTGAATGGACTGCTGCCATGGAGAAGCTTTCTGGTTGGAGTAAAGATGAAGTTATAGGAAAAATGCTTGTAGGGGAGATTTTTGGGAACTTCTGTAGGTTGAAAGATCTAGATACCCTCACTAGGTTTATGATCCTATTATATCAAGGCATTGGTGGTGAACAAACTGAGAAGTTTCCATTAGGATTTTTCAATAAGAATGGTAACTATATGGAGGTGCTTTTAACATCAAACAAAAGGACTGATGCAGAAGGAAATGTCATTGGTTGTATCTGTTTCCTGCAAGTTGTTGAGCCAAACTTGCAAGGGGTCTCTGAAGGACTCGGCCTGGGCGAAAGACGGGGCAATTTGCAGCTTAAGGAGTTGACTTACTTAAAGCGGGAGATGAAAAATCCTTTAAATGGCATCAAATTTACTCATGAACTCCTTGTAAATTCTGGCATTACAGACAACCAGAAACTCTTCCTTGTTACTAGTGATGCGTGCGAGAGACAGATCATGGCGATCATTGAGGATATGGACTTCAGAAGTTTAGAAGTGGGCCAAGTACAGATAAACAGAGACGAGTTTGTCCTCGGGAGTGTTCTGGATGCAATTATCTGTCAAATCATGATTGTTGTCAGAGAGAAGAACATACAACTTTTTCATGAAATTCCAGAAGAAATCAAAGTGTTAACTCTTTGTGGCGATCAAATTAAACTTCAGCTGGTTTTATCAGATTTCTTACTTAGCGTAGTGCAGAACACGCCTGCTCTGGACGGTTGGGTTGAAATCAAAATTTCAGCTGGTTTGAAGCTTATACAAGATGGAAATGAACATATTCACTTGCAGATCAGAATGTCACATCCAGGTCAAGGTCTGCCTCCTGAACTAATCCAAGATATGGTTGGAGGAGGACAACAGTGGAGTTCAGAGCAAGGCCTCGCCCTAAATCTGTCACGCAGACTTCTCAATAAATTGAACGGTAATGTCTGCTACGTTAGAGAGCAAACTAAATGCTACTTCCTCATTGATCTCGAACTCAAGTTAAGGCGCTCGAGGGGGTCGCTGGAAGCCACTACAAGCCAAAGGACTTGA 3486 43.72 DEFTDGDKPPASSFVSLNNQSNNFTSILADTLMENSRGGGRGMAAFSSSAESNTRARPSNTASTDNRAAALVQYNADAGLLNKFEQSDASGESFNYSRSVLEAPQSVPEEQITAYLSKIQRGGMVQPFGCLLAIEESSLKIISYSENCFELLGINDQFESAPGKGLIGVHIRALFTPSSGASLAKAASSREISLLNPVWVYSRNTQKPFYAILHRIDVGIVIDLEPARSVDPALSLAGAVHSQKLAVRAISRLQALPGGDIGVLCDTVVEDVQKLTGYDRVMVYKFHDDEHGEVVSEIRRSDLEPYLGLHYPAIDIPQAARFLFKQNRVRMICDCHAKPVQVIQSDELKQPLCLVNSTLRSPHSCHLQYMANMGSIASLAMAVIMNSDDSPTRLWGLVVCHHTSPRYVPFPLRYACEFLMQAFGLQLYMELQLALQITEKKVLKTQTLLCDMLLRGSPYALLTQSPSIKDLVKCDGAALYYQGACCLLGVTPTEAQVKNLVEWILNNHGDSTGLSTDSLADAGYPEAASLGDAICGMTAARISSKDFLFWFRSHAAKEIQWGGAKHHPDDKDDGGRMHPRSSFKAFLEVAKSKSMSWEAQEINAIHSLQLIMRESFSSARDSDSKAEMSVQQSDTVSQDIGELSSVACEMVRLIETATAPIFGVDSTGVINGWNAKIAELVGLQTGEALGRSLDEIVHDDSRGTVGNLVLHALQGVEDKNVELKLRKFGTDKENSAVYIVVNACTSRNYTNKVIGVCFVGQDITSEKGMRDRFIRLQGDYRTIIESLSPLIPPIFVSDENGYCCEWTAAMEKLSGWSKDEVIGKMLVGEIFGNFCRLKDLDTLTRFMILLYQGIGGEQTEKFPLGFFNKNGNYMEVLLTSNKRTDAEGNVIGCICFLQVVEPNLQGVSEGLGLGERRGNLQLKELTYLKREMKNPLNGIKFTHELLVNSGITDNQKLFLVTSDACERQIMAIIEDMDFRSLEVGQVQINRDEFVLGSVLDAIICQIMIVVREKNIQLFHEIPEEIKVLTLCGDQIKLQLVLSDFLLSVVQNTPALDGWVEIKISAGLKLIQDGNEHIHLQIRMSHPGQGLPPELIQDMVGGGQQWSSEQGLALNLSRRLLNKLNGNVCYVREQTKCYFLIDLELKLRRSRGSLEATTSQRT 1161
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 6899041 6905753 + Carg19914-RA Car13g00449 159366
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car13g00449 1161 Pfam PAS fold 114 227 IPR013654 GO:0006355
Car13g00449 1161 ProSiteProfiles PAS repeat profile. 646 716 IPR000014 -
Car13g00449 1161 ProSiteProfiles Phytochrome chromophore attachment site domain profile. 260 421 IPR016132 -
Car13g00449 1161 Pfam PAS fold 779 899 IPR013767 GO:0006355
Car13g00449 1161 Pfam PAS fold 649 763 IPR013767 GO:0006355
Car13g00449 1161 MobiDBLite consensus disorder prediction 39 65 - -
Car13g00449 1161 Pfam GAF domain 260 431 IPR003018 GO:0005515
Car13g00449 1161 ProSiteProfiles Histidine kinase domain profile. 927 1146 IPR005467 -
Car13g00449 1161 ProSitePatterns Phytochrome chromophore attachment site signature. 360 369 IPR013516 -
Car13g00449 1161 ProSiteProfiles PAS repeat profile. 779 831 IPR000014 -
Car13g00449 1161 Pfam Phytochrome region 444 618 IPR013515 GO:0006355|GO:0009584
Car13g00449 1161 ProSiteProfiles PAC domain profile. 719 775 IPR000700 -
Car13g00449 1161 MobiDBLite consensus disorder prediction 46 65 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Car13g00449 Car18g00423 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car06g01329 Car-Chr6:9492019 Car13g00449 Car-Chr13:6899041 0 dispersed
Car13g00449 Car-Chr13:6899041 Car14g01399 Car-Chr14:11804661 0 dispersed
Car13g00449 Car-Chr13:6899041 Car18g00423 Car-Chr18:2652153 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car13g00449 K12123 - csv:101214900 1927.91