Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car13g00458 ATGGGTTACCCAGATGAGATGCAGAAGCAGAAGCAGAAGCAGAAGCAAGCAGGTGAAGAACAGTCGCAACCACGAAGAAGTGGTCGAGGGAAGATTGAAATCAAGAGAATTGAAAACACAACAAATCGCCAAGTCACTTTCTGTAAACGCAGAAATGGTTTGCTTAAGAAGGCTTATGAGCTTTCTGTTCTCTGTGATGCTGAGGTCGCTCTTATTGTCTTCTCCACCCGTGGTCGCCTCTATGAGTATGCCAACAACAGTGTTAGGGCTACGATTTCGAGGTACAAAAAGGCATGCTCGGATCCCTTAAGCGCCGGGTCCGTTTCGGAAGCCAATACACAGTTCTACGAGCAAGAATCCGCGAAATTGCGAGCGCAAATCGGGAATATGCAAAACCTAAACAGGCATTTGTTGGGGGAATCCATCAGTTCGTTGTCGGTGAAAGATCTCAAAAGCCTGCAGGTGAAACTGGAGAAGGGAATTAGCCGAATTCGATCCAGAAAGAATGAGGTTCTGTTTGCGGAGATTGAGTACATGCACAAAAGGGAAATTGAACTGCACAACACCAACCAGCTGATACGAGCAAAGATAGCGGAGATGGAGAGAAGAGAACAAAACAGAAGTGGAAATAACAGCATAGGTGCAAGAGGAGAAGGAGAAGGA 663 46.3 MGYPDEMQKQKQKQKQAGEEQSQPRRSGRGKIEIKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSTRGRLYEYANNSVRATISRYKKACSDPLSAGSVSEANTQFYEQESAKLRAQIGNMQNLNRHLLGESISSLSVKDLKSLQVKLEKGISRIRSRKNEVLFAEIEYMHKREIELHNTNQLIRAKIAEMERREQNRSGNNSIGARGEGEG 221
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 6936586 6939796 - Carg19905-RA Car13g00458 159375
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car13g00458 221 ProSiteProfiles K-box domain profile. 113 203 IPR002487 GO:0003700|GO:0005634|GO:0006355
Car13g00458 221 MobiDBLite consensus disorder prediction 1 36 - -
Car13g00458 221 ProSitePatterns MADS-box domain signature. 29 83 IPR002100 GO:0003677|GO:0046983
Car13g00458 221 MobiDBLite consensus disorder prediction 8 36 - -
Car13g00458 221 Pfam K-box region 111 197 IPR002487 GO:0003700|GO:0005634|GO:0006355
Car13g00458 221 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 36 83 IPR002100 GO:0003677|GO:0046983
Car13g00458 221 ProSiteProfiles MADS-box domain profile. 27 87 IPR002100 GO:0003677|GO:0046983
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Car07g00131 Car13g00458 CCT
Car03g01215 Car13g00458 CCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car13g00458 Car-Chr13:6936586 Car16g00251 Car-Chr16:1590857 1.91E-44 dispersed
Car13g00458 Car-Chr13:6936586 Car20g00220 Car-Chr20:1276126 1.17E-55 wgd
Car13g00458 Car-Chr13:6936586 Car03g01215 Car-Chr3:9481463 6.61E-107 wgd
Car13g00458 Car-Chr13:6936586 Car07g00131 Car-Chr7:809346 1.82E-104 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
4531 PF01486 K-box 5.50E-25 No_clan Car TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car13g00458 K09264 - csv:101205366 323.553