Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car13g00461 ATGATGGTGCCCAAAAGCTTCTTCGTTTTCATTGTTCTTGCGGTGGATTGCTTCATTTTCTTCAGATTTGCAGATTCCAAGCTCCCACAAGAAGAGGTTGATGCACTACAACAAATTACGAGAACGCTAGGTGCAGTTTATTGGAAATTCAATAGTGATTCCTGTGTCGTTGAAATGTTCGGGATCACAGAAAAGCCTCCCAGGGGATCTGAGGGTAAAATTGGTTGTGATTGCAACGTCGAGAACAGCACAATTTGTCATGTCGTAAGGATAGAATTCAAGCAACACAATCTGCCCGGTGTTCTCCCACGTGAAATAGTCAAACTTCCTTTCCTGAAAGAAGTTGATTTAGCTTACAACTACCTTCATGGTAATATACCTCGGGAGTGGGCTTCAACGCGGTTGACGTCGATCTCTCTTCTTGTAAACCGGTTATCAGGGGAAATACCAGCAGAATTGGGGAATATTACTACTCTAACAGAACTGCACCTTGAAGCAAACCAATTTAGTGGTGCAATTCCATCACAGCTTGGGAAGTTGAGCAACCTGCAAAGCTTGATGCTATCATCTAATCAATTGGCTGGCACGTTGCCAACAACGTTTGCGGGATTGAAAAACCTAACAAATTTCCGGATAAATGATAACAACCTCAACGGAACCATACCCGACTTCATACAAAATTGGCCGCTACTCGAAAGATTAGAACTACATGGAAGTGGACTCCAGGGACCAATTCCTGCAAAAATATCCCTTTTAAGCAACTTAAAAGAATTGAGGATCAGTGATATCAATGGGCCAATGCAGAATTTTCCTGACTTGACAAACATGACGGGCTTGGTTAGATTGGTCCTGAGAAATTGTAACATTGCTGGAGAGATTCCTTCATATGTGTGGATGGCACCAGACTTGCAAATGCTGGACCTCAGCTTTAACAAGTTGACTGGGGAAATTCCAGATGATACAAACATGGAGCGCATGAGATTTCTCTTCTTAAGTGGCAATATGCTGAGTGGGAAACTACCAGAGTCAATCTTGAAGGATGGATCTAATGTCGATCTTTCATACAATAACTTGACATGGCAAGGCCCTGAGCAGCATGCTTGTAGAAAGACTTTGAATATGAATCTGAACTTGTTTCGAAGTTCTTCCACCGGCAACCCCTTACAAGAAAGTCTCCCCTGCTTGAAGGATTCCATCTGTTCAAAATATTCGAAATGTTGGTTCGTAAATGCCGGTGGAAATGACTTAACTATGGAGGTAAAGAACAAAAGCGTTCTCTACAACGGGGATGCAAATGTTGATGGTGGGACAGCAAAACTCTATACGGATCATGATAGCTACTGGGGGTTGAGTAGTACTGGAGATTTCATGGACGATGACGATTTCCAAAATACGCGCTACACTTTATCGCTGCTTTCATCAAATTTGTCTGAGCTATACTCAACAGCGCGTCGGAGTCCAATTACGCTCACTTATTTCCATCATTGCTTGGATAATGGAAACTACTTAGTGACCCTTCATTTTGCAGAGCTACAATTTACAAATGATGAGACATATACAAGTCTTGGAAGGCGGAAATTCGATATCTACATTCAGGATAGGTTGGTATTGAAGAATTTTGATATTGAAGAGGAGGCTGGAGGAGCACAAAAACCAACAGAAAGGGTGTTTGCTAACGTTAGTGTAATTAATCATGTCCTGGAGATCCGATTGTATTGGGCTGGAAAAGGGACGACTAGGATTCCTCAAAGAGGAAGCTATGGTCCACTTATATCAGCTATTTCTGTTTATTCTGATGTTAAATATTGTTCAATCCATGAAAGTGGTAAAACGAAAACTGTAGCCATCGTCATTGGAGTTACGGTTGGAGTATTATGTGTTGCTTCAATCGTCATATTAGGACTTCTTCGGTGGAAAAGCACCCTTAGAGCAATCAGGCGCAATAAAGGCGGTACAGATCTTGCAGGAATAGAAGTGCAAACTGGAATTTTTACCTTGAAACAAATAAAAGCTGCAACCAATCATTTTGATTCCTGTAATAAAATTGGAGAAGGTGGTTTTGGCCCTGTTTATAAGGGTGAATTGGTTGATGGTACCATTGTAGCAATTAAGCAGCTATCCTCCAAATCAAGGCAGGGAAACCGTGAATTTCTGAATGAGATAGGAATGATCTCTTGCTTGCAACACCCAAATCTAGTCAAGCTCCATGGATGCTGCATTGAAGGAGATCAACTGTTGTTGGTATATGAATATCTGGAAAACAATAGTCTTGCCCGAGCACTTTTCGGTCCGTCTTACAGTCGGCTTAATCTAGATTGGCCAACCAGGCTTAGAATCTGTATCGGTATAGCGAAAGGTTTAGCATATCTCCACGAAGAATCGAGCCTCAAAATCGTTCATAGAGACATCAAAGCTACTAATGTGTTACTCGATGGCGAATTGAATCCTAAAATATCTGATTTTGGTTTGGCTAAGCTTGATGATGAGGAGAAGACTCATATCACCACCAGAGTGGCTGGGACCATAGGATATATGGCTCCCGAGTATGCGCTTTGGGGTTATCTCACCTACAAAGCAGATGTCTATAGTTTCGGAGTCGTGGCGTTGGAAATTATCAGTGGCAGAAGCAACAATGATTACGTACCAAGCGAAACTTGTGTTTGTCTTCTTGACTGGGCCTGTCACTTGCAACAATCTGGGAACCTCATGGAGTTGGTAGATGAGAAGTTGAGGTCAGAAATCGACGGAAAACAAGCGGAAAACATGGTGAAAATAGCCCTTCTCTGCACGAATGCTTCGCCGTCAGTAAGGCCAGCAATGTCGGAAGTGGTGAACATGCTGGAAGGAAGAATGGGAATTCCAGAGCTAATCCCAGAACCCAGTAGTTATAATGAAGATCTGAGGTTCAAGGCAATGAGGGATATGCGTAAACAGCAGCAGAACCAAAGCTTGAGTGGAAGCCAGACCCAAAATTCCACACAAAATTCCACAATGAGAACATTTGGGTCTTCCTCTACTTCTGGAAATGAGTTCTATGATATCAACCCAGAGCCAAGATCATCATCATCAACCTGA 3075 42.34 MMVPKSFFVFIVLAVDCFIFFRFADSKLPQEEVDALQQITRTLGAVYWKFNSDSCVVEMFGITEKPPRGSEGKIGCDCNVENSTICHVVRIEFKQHNLPGVLPREIVKLPFLKEVDLAYNYLHGNIPREWASTRLTSISLLVNRLSGEIPAELGNITTLTELHLEANQFSGAIPSQLGKLSNLQSLMLSSNQLAGTLPTTFAGLKNLTNFRINDNNLNGTIPDFIQNWPLLERLELHGSGLQGPIPAKISLLSNLKELRISDINGPMQNFPDLTNMTGLVRLVLRNCNIAGEIPSYVWMAPDLQMLDLSFNKLTGEIPDDTNMERMRFLFLSGNMLSGKLPESILKDGSNVDLSYNNLTWQGPEQHACRKTLNMNLNLFRSSSTGNPLQESLPCLKDSICSKYSKCWFVNAGGNDLTMEVKNKSVLYNGDANVDGGTAKLYTDHDSYWGLSSTGDFMDDDDFQNTRYTLSLLSSNLSELYSTARRSPITLTYFHHCLDNGNYLVTLHFAELQFTNDETYTSLGRRKFDIYIQDRLVLKNFDIEEEAGGAQKPTERVFANVSVINHVLEIRLYWAGKGTTRIPQRGSYGPLISAISVYSDVKYCSIHESGKTKTVAIVIGVTVGVLCVASIVILGLLRWKSTLRAIRRNKGGTDLAGIEVQTGIFTLKQIKAATNHFDSCNKIGEGGFGPVYKGELVDGTIVAIKQLSSKSRQGNREFLNEIGMISCLQHPNLVKLHGCCIEGDQLLLVYEYLENNSLARALFGPSYSRLNLDWPTRLRICIGIAKGLAYLHEESSLKIVHRDIKATNVLLDGELNPKISDFGLAKLDDEEKTHITTRVAGTIGYMAPEYALWGYLTYKADVYSFGVVALEIISGRSNNDYVPSETCVCLLDWACHLQQSGNLMELVDEKLRSEIDGKQAENMVKIALLCTNASPSVRPAMSEVVNMLEGRMGIPELIPEPSSYNEDLRFKAMRDMRKQQQNQSLSGSQTQNSTQNSTMRTFGSSSTSGNEFYDINPEPRSSSST 1024
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 6946609 6957396 - Carg19902-RA Car13g00461 159378
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car13g00461 1024 Pfam Protein tyrosine and serine/threonine kinase 680 947 IPR001245 GO:0004672|GO:0006468
Car13g00461 1024 ProSitePatterns Serine/Threonine protein kinases active-site signature. 798 810 IPR008271 GO:0004672|GO:0006468
Car13g00461 1024 Pfam Leucine rich repeat 158 217 IPR001611 GO:0005515
Car13g00461 1024 Pfam Malectin domain 406 594 IPR021720 -
Car13g00461 1024 ProSiteProfiles Protein kinase domain profile. 676 956 IPR000719 GO:0004672|GO:0005524|GO:0006468
Car13g00461 1024 MobiDBLite consensus disorder prediction 974 1024 - -
Car13g00461 1024 MobiDBLite consensus disorder prediction 976 1024 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car01g01083 Car-Chr1:10150928 Car13g00461 Car-Chr13:6946609 4.41E-15 dispersed
Car07g00915 Car-Chr7:5071651 Car13g00461 Car-Chr13:6946609 7.93E-85 dispersed
Car13g00461 Car-Chr13:6946609 Car16g00424 Car-Chr16:2649297 6.35E-97 dispersed
Car14g00054 Car-Chr14:307780 Car13g00461 Car-Chr13:6946609 2.35E-78 dispersed
Car04g00614 Car-Chr4:3512572 Car13g00461 Car-Chr13:6946609 6.47E-16 transposed
Car04g01145 Car-Chr4:6592258 Car13g00461 Car-Chr13:6946609 2.25E-71 transposed
Car19g00834 Car-Chr19:8837389 Car13g00461 Car-Chr13:6946609 2.03E-94 transposed
Car01g01082 Car-Chr1:10134355 Car13g00461 Car-Chr13:6946609 4.73E-17 wgd
Car13g00461 Car-Chr13:6946609 Car18g00412 Car-Chr18:2575199 3.99E-10 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
89271 PF07714 PK_Tyr_Ser-Thr 1.40E-48 CL0016 Car PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car13g00461 - - cmax:111495536 1979.14