Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car13g00463 ATGACATCGGGGACGAGAATGCCCACTTGGAAGGAGAGGGAGAACAACAAGCGCCGTGAGAGGCGCCGACGTGCCATCGCCGCTAAGATCTTTCTCGGCCTGCGAATGTATGGAAACTATAAGCTTCCCAAGCACTGCGATAATAATGAGGTCCTCAAAGCCCTCTGCGTTGAAGCTGGGTGGACTGTAGAGGAAGACGGCACTACCTATCGGAAGGGATGCAAGCCTGTGGAACGCGATATCATGGGCGGATCAGCTTCTGCAAGTCCATGTTCATCTTATCAGCCGAGCCCATGTGCATCTTATAACCCAAGTCCTGCGTCTTCTTCCTTCCCAAGCCCTTCCCGTTACGCCATTAAAGGCAATGACAATGCTGCTGATCCCAATTCCCTCATCCCATGGCTGAAGAACCTCTCCTCAGCTTCATCACCAGCCTCCTCCAGGCTGCCTCACCATCTTTATATTACTGGTGGCTCCATAAGTGCACCTGTTACCCCTCCGTCGAGCTCCCCAACTGCTCGAACACCCAGAAAACCAAATGATTGGGACAATCATCCAGCAGTTGCTCCTGCTTGGGCTGCACAGCGCTTCTCATGTTTGCCTGCATCGACCCCTCCGAGCCCTGGGCGTCAGATGTTGGCTGATTCAGCATGGCTTGATAGTATGCGGATTCCTCAAAGTGGACCATCGTCACCAACCTTCAGCCTTGTGGCTAGGAATCCTTTTGGATTTAAGGAGGCAATGTCTGCTGGAGGTCCTTCATTCGGATTTAAGGAGGCAATGTCAAATCCAATGTCTGCTGGAGGGTCTCGTAATTGGACTCCTACACAGAGCGGGACGTGCTCACCCACGGTTGCTGCGGGCACCGATCATACTTCAGATGTTCCTATGACGGATGGGACTGCAGCGGAGTTTGCCTTCGGAAGTTGTTCGATTGGGTTGGTGAAGCCTTGGGAAGGAGAGAGAATTCATGAGGAATGCATCTCTGATGATCTCGAACTTACACTTGGGAATTCAAGGACGAGGTAA 1029 52.28 MTSGTRMPTWKERENNKRRERRRRAIAAKIFLGLRMYGNYKLPKHCDNNEVLKALCVEAGWTVEEDGTTYRKGCKPVERDIMGGSASASPCSSYQPSPCASYNPSPASSSFPSPSRYAIKGNDNAADPNSLIPWLKNLSSASSPASSRLPHHLYITGGSISAPVTPPSSSPTARTPRKPNDWDNHPAVAPAWAAQRFSCLPASTPPSPGRQMLADSAWLDSMRIPQSGPSSPTFSLVARNPFGFKEAMSAGGPSFGFKEAMSNPMSAGGSRNWTPTQSGTCSPTVAAGTDHTSDVPMTDGTAAEFAFGSCSIGLVKPWEGERIHEECISDDLELTLGNSRTR 342
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 6967221 6969815 - Carg19900-RA Car13g00463 159380

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Car13g00463 342 MobiDBLite consensus disorder prediction 158 186 - -
Car13g00463 342 Pfam BES1/BZR1 plant transcription factor, N-terminal 3 139 IPR008540 -
Car13g00463 342 MobiDBLite consensus disorder prediction 1 21 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car13g00463 - - - csv:101204637 535.413
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Car13g00463 Car18g00409 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car03g00704 Car-Chr3:6143695 Car13g00463 Car-Chr13:6967221 1.47E-45 dispersed
Car04g00615 Car-Chr4:3523205 Car13g00463 Car-Chr13:6967221 1.75E-134 dispersed
Car07g00444 Car-Chr7:2261078 Car13g00463 Car-Chr13:6967221 2.96E-49 dispersed
Car12g00460 Car-Chr12:2902675 Car13g00463 Car-Chr13:6967221 1.59E-40 dispersed
Car13g00463 Car-Chr13:6967221 Car16g00394 Car-Chr16:2419196 4.95E-127 dispersed
Car13g00463 Car-Chr13:6967221 Car18g00409 Car-Chr18:2553612 4.78E-161 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi10g261 Blo01g00870 Blo11g00263 . . . . Bma14g00977 . Cmo13g00609 Cmo18g00412 . . . . . Cpe09g00790 . . . . . . . . . . . . . . . . . Cone6ag0940 Cone9ag0944 . . Chy12g00053 . . . . Bda07g00961 . . . . Sed08g2730 . . Cma13g00580 Cma18g00433 Car13g00463 Car18g00409 . Cpe20g00481 Bhi08g02145 Tan05g2533 Cmetu12g0459 Lac10g0987 Hepe07g1834 . . Cla03g00693 Cam03g0700 Cec03g0673 Cco03g0709 Clacu03g0742 Cmu03g1334 Cre03g0981 Lsi02g00836 Csa01g02293 . Cme12g01261
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Car12g00460 . 1 306 BZR Transcription Factor Family AT1G75080 59.5 2.8e-82 302.8
Car07g00444 CST 33 323 BZR Transcription Factor Family AT1G75080 58.6 8.4e-79 291.2
Car03g00704 CST 28 318 BZR Transcription Factor Family AT1G75080 58.4 1.9e-78 290.0
Car05g00188 CCT 185 446 BZR Transcription Factor Family AT1G75080 60.7 1.3e-76 283.9
Car12g00460 . 1 306 BZR Transcription Factor Family AT1G19350 57.6 4.5e-80 295.4
Car07g00444 CST 33 321 BZR Transcription Factor Family AT1G19350 59.6 3.2e-78 289.3
Car03g00704 CST 28 317 BZR Transcription Factor Family AT1G19350 59.2 5.4e-78 288.5
Car05g00188 CCT 185 446 BZR Transcription Factor Family AT1G19350 60.7 1.3e-76 283.9
Car07g00444 CST 10 323 BZR Transcription Factor Family AT3G50750 56.6 1.4e-76 283.5
Car03g00704 CST 6 313 BZR Transcription Factor Family AT3G50750 57.7 1.9e-76 283.1
Car05g00188 CCT 153 445 BZR Transcription Factor Family AT3G50750 50.2 2.0e-57 219.9
Car04g00615 . 77 326 BZR Transcription Factor Family AT4G18890 54.2 1.9e-49 193.0
Car18g00409 CST 80 326 BZR Transcription Factor Family AT4G18890 51.2 1.3e-48 190.3
Car16g00394 . 77 325 BZR Transcription Factor Family AT4G18890 52.6 4.8e-48 188.3
Car04g00615 . 1 326 BZR Transcription Factor Family AT1G78700 72.2 1.2e-117 420.2
Car16g00394 . 1 325 BZR Transcription Factor Family AT1G78700 71.9 3.2e-115 412.1
Car18g00409 CST 1 326 BZR Transcription Factor Family AT1G78700 69.2 2.8e-103 372.5
Car13g00463 CST 1 342 BZR Transcription Factor Family AT1G78700 65.5 3.6e-103 372.1
Car03g00704 CST 28 200 BZR Transcription Factor Family AT4G36780 78.5 1.0e-63 240.7
Car07g00444 CST 33 204 BZR Transcription Factor Family AT4G36780 76.3 6.2e-61 231.5
Car05g00188 CCT 185 349 BZR Transcription Factor Family AT4G36780 57.6 2.6e-38 156.4
Car12g00460 . 33 204 BZR Transcription Factor Family AT4G36780 56.7 1.7e-37 153.7
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000940 3 4 6 4 3 2 4 2 2 2 2 2 4 2 2 4 2 3 4 2 2 2 2 2 2 2 2 6 3 3 85
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
4532 PF05687 BES1_N 5.90E-65 No_clan Car TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Car13g00463 Car_Chr13 FPKM 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.077282 0.065494 0.0