Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car13g00464 ATGGATGAAGCTCAGGGAAGCGGCTTGACTTCGTTGCCTCCATTTTTAGTCAAAACATATGATATGGTCGATGATCCTTCAACCAATTCGATTGTTTCATGGAGTTCAAGTGATAAAAGCTTTGTTGTTTGGAAACCACTGGAGTTTTCATCAGTTTTGTTGCCTAAATTCTTTAAGCATAGCAACTTCTCGAGCTTCATCAGGCAGCTCAATACATATGGGTTCAAGAAGGTGGATCCTGATCAATGGGAATTTGCCAATGATGATTTTGTTAGAGGTGAGCAACACCTGATGAAGAACATCCACAGGAGAAAACCAGTTCATAGTCATTCTTTACAGAACCCCCATGGGCAAGGAGTATCTCCTCCGCTAACTGAAGTCGAGAGAAAGAGTTTCGAGGATAACATCGAGACGCTGAAACGGGATAAAGAGCAGCTTCTTCTCGAGTTGCGGAAACACGAACAAGAGTATCAAGGAGTTGTGTTGCAAATGCAGAATTTGAAAGATCGCTTTCAATGTGTTCAACAAGGCATGCAATTATTTATCAGTCTGATAGCTCGTTTTTTGCATAAACCAGGACTTCGCTTGGATCTTCTGCCACAATTGGAAACTTCTGATAGAAAGAGGAGATTGCCTAGAGTTTCTTACAACAATAGTGAAGATAACCTTGAGGATAATCAGATGGGGACAACTCAAACCATTAGTAGAGAAAATAGGGATTGTAGTTTTGATCCAATTTTGAAAGAAGAACAGTTTGAACTTGTTGAGACATCCCTAACCTTTTGGGAAGGCATTATCCATAGTTATGGTCAAACAATTAGTCCACTTGATTCCAGCTCAAACCTGGAGTTGGGTGGATCTGTAAGTCATGCCAGTAGCCCTGCTGTAACTTGCAGGCAAGTTAGTGAGGAGCTTCGGTGTAAATCACCAGGAATTGACATGAATTTGGAGCCCATGGCAACCGTTGCTCCTGAATCTGTAGCCTCGAAAGATCAGGCAGCTGGAGTCAAAGCTCCAGTACCAACTGGTGTCAATGATGTTTTCTGGCAGCAATTCTTGACGGAGAATCCTGGTTCATCTGACCCACAAGAAGTTCAATCAGCCAGAAAAGATTCTGATGTCATAATCGAAGAAAACAGACCGAGCGATCAAGGAAATTTTTGGTGGAACACGAGGAGTGTAAATAATGTTGTAGAACAGATAGGGAACCTTGCTCCAGCAGAGAAATTTTCATAG 1236 41.99 MDEAQGSGLTSLPPFLVKTYDMVDDPSTNSIVSWSSSDKSFVVWKPLEFSSVLLPKFFKHSNFSSFIRQLNTYGFKKVDPDQWEFANDDFVRGEQHLMKNIHRRKPVHSHSLQNPHGQGVSPPLTEVERKSFEDNIETLKRDKEQLLLELRKHEQEYQGVVLQMQNLKDRFQCVQQGMQLFISLIARFLHKPGLRLDLLPQLETSDRKRRLPRVSYNNSEDNLEDNQMGTTQTISRENRDCSFDPILKEEQFELVETSLTFWEGIIHSYGQTISPLDSSSNLELGGSVSHASSPAVTCRQVSEELRCKSPGIDMNLEPMATVAPESVASKDQAAGVKAPVPTGVNDVFWQQFLTENPGSSDPQEVQSARKDSDVIIEENRPSDQGNFWWNTRSVNNVVEQIGNLAPAEKFS 411
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 6973433 6976750 + Carg19899-RA Car13g00464 159381

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Car13g00464 411 MobiDBLite consensus disorder prediction 355 382 - -
Car13g00464 411 Gene3D - 9 105 IPR036388 -
Car13g00464 411 SMART hsfneu3 11 104 IPR000232 GO:0003700|GO:0006355|GO:0043565
Car13g00464 411 Pfam HSF-type DNA-binding 15 104 IPR000232 GO:0003700|GO:0006355|GO:0043565
Car13g00464 411 ProSitePatterns HSF-type DNA-binding domain signature. 54 78 IPR000232 GO:0003700|GO:0006355|GO:0043565
Car13g00464 411 PANTHER HEAT STRESS TRANSCRIPTION FACTOR A-4C 1 391 - -
Car13g00464 411 PANTHER HEAT SHOCK TRANSCRIPTION FACTOR 1 391 IPR027725 -
Car13g00464 411 Coils Coil 129 170 - -
Car13g00464 411 PRINTS Heat shock factor (HSF) domain signature 15 38 IPR000232 GO:0003700|GO:0006355|GO:0043565
Car13g00464 411 PRINTS Heat shock factor (HSF) domain signature 53 65 IPR000232 GO:0003700|GO:0006355|GO:0043565
Car13g00464 411 PRINTS Heat shock factor (HSF) domain signature 66 78 IPR000232 GO:0003700|GO:0006355|GO:0043565
Car13g00464 411 SUPERFAMILY Winged helix DNA-binding domain 11 104 IPR036390 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car13g00464 K09419 HSFF; heat shock transcription factor, other eukaryote - csv:101204390 708.753
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Car07g00139 Car13g00464 CCT
Car07g00139 Car13g00464 ECH
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car13g00464 Car-Chr13:6973433 Car16g01108 Car-Chr16:9533326 6.79E-59 dispersed
Car02g00041 Car-Chr2:314592 Car13g00464 Car-Chr13:6973433 4.39E-66 transposed
Car13g00464 Car-Chr13:6973433 Car20g00213 Car-Chr20:1224119 1.88E-12 wgd
Car13g00464 Car-Chr13:6973433 Car07g00139 Car-Chr7:836819 1.68E-139 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi10g260 Blo01g00868 Blo11g00264 . . . . Bma14g00978 Bma01g01469 Cmo13g00611 . . Cma07g00159 . Car07g00139 . . . . . . . . . . Cla01g02342 Cam01g2455 Cec04g2104 Cco04g2180 Clacu01g2475 Cmu01g2342 Cre04g2010 . Cone5ag1639 . . Lsi01g00219 Csa06g03726 Chy12g00055 Cme08g00202 . . . Bda07g00962 . . . . Sed08g2732 . Cmo07g00157 Cma13g00581 . Car13g00464 . Cpe19g01087 Cpe20g00480 Bhi08g02149 Tan05g2532 Cmetu12g1147 Lac10g0985 Hepe07g1835 . . Cla03g00695 Cam03g0699 Cec03g0671 Cco03g0708 Clacu03g0743 Cmu03g1335 Cre03g0980 Lsi02g00833 Csa01g02297 Chy02g00208 Cme12g01263
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Car17g01136 . 40 228 HSF AT4G17750 59.7 6.8e-61 232.3
Car14g01574 CST 43 247 HSF AT4G17750 57.0 1.7e-59 227.6
Car05g00076 . 18 243 HSF AT4G17750 51.4 3.7e-59 226.5
Car12g00591 CST 7 240 HSF AT4G17750 50.6 4.1e-58 223.0
Car19g00018 . 40 269 HSF AT4G17750 51.2 4.1e-58 223.0
Car06g01187 CST 40 240 HSF AT4G17750 52.8 4.9e-51 199.5
Car13g00464 CCT,ECH 13 192 HSF AT4G17750 50.3 7.6e-44 175.6
Car02g00041 . 12 110 HSF AT4G17750 71.7 2.3e-40 164.1
Car05g00150 CCT 107 205 HSF AT4G17750 71.7 7.3e-39 159.1
Car17g01136 . 41 228 HSF AT5G16820 61.3 1.3e-59 228.0
Car19g00018 . 41 248 HSF AT5G16820 53.3 3.4e-57 219.9
Car14g01574 CST 24 248 HSF AT5G16820 51.7 9.9e-57 218.4
Car12g00591 CST 10 224 HSF AT5G16820 51.6 4.9e-56 216.1
Car05g00076 . 43 227 HSF AT5G16820 55.2 1.2e-54 211.5
Car06g01187 CST 41 245 HSF AT5G16820 50.5 6.4e-48 189.1
Car05g01314 CST 79 262 HSF AT5G16820 52.4 2.1e-46 184.1
Car07g00139 CCT,ECH 120 302 HSF AT5G16820 51.9 1.9e-44 177.6
Car02g00041 . 13 112 HSF AT5G16820 78.0 8.4e-40 162.2
Car16g01108 CST 24 518 HSF AT1G32330 54.1 2.6e-121 433.0
Car06g00570 CST 13 516 HSF AT1G32330 52.3 5.5e-116 415.2
Car17g01136 . 29 228 HSF AT1G32330 55.8 1.5e-60 231.1
Car12g00591 CST 29 221 HSF AT1G32330 53.7 1.0e-53 208.4
Car06g01187 CST 25 252 HSF AT1G32330 52.3 5.6e-52 202.6
Car02g00041 . 11 106 HSF AT1G32330 76.0 2.2e-40 164.1
Car05g00150 CCT 107 204 HSF AT1G32330 71.4 4.6e-38 156.4
Car17g01136 . 41 228 HSF AT3G02990 62.1 1.2e-59 228.0
Car14g01574 CST 44 247 HSF AT3G02990 54.3 3.0e-58 223.4
Car05g00076 . 43 243 HSF AT3G02990 52.7 3.7e-56 216.5
Car12g00591 CST 41 217 HSF AT3G02990 55.4 4.5e-54 209.5
Car02g00041 . 13 106 HSF AT3G02990 77.7 8.2e-40 162.2
Car14g01574 CST 32 243 HSF AT2G26150 57.7 1.9e-65 246.9
Car17g01136 . 29 224 HSF AT2G26150 61.2 5.4e-65 245.4
Car16g01108 CST 3 243 HSF AT2G26150 55.8 1.3e-61 234.2
Car06g00570 CST 8 243 HSF AT2G26150 56.1 6.2e-61 231.9
Car02g00041 . 2 111 HSF AT4G18880 67.3 4.4e-42 169.5
Car06g01187 CST 41 170 HSF AT4G18880 56.0 5.0e-38 156.0
Car14g01712 . 6 446 HSF AT4G13980 52.0 1.8e-111 400.2
Car02g00041 . 4 111 HSF AT4G13980 65.7 2.6e-38 157.1
Car14g01574 CST 32 246 HSF AT5G43840 50.7 1.6e-54 210.3
Car17g01136 . 29 225 HSF AT5G43840 51.8 1.3e-51 200.7
Car12g00591 CST 29 220 HSF AT5G43840 52.6 1.4e-47 187.2
Car19g00018 . 29 344 HSF AT3G22830 51.9 9.2e-88 321.2
Car14g01574 CST 5 253 HSF AT3G22830 59.7 8.0e-84 308.1
Car17g01136 . 1 230 HSF AT3G22830 59.1 1.9e-77 287.0
Car05g00076 . 31 241 HSF AT3G22830 55.9 4.9e-65 245.7
Car06g00570 CST 9 242 HSF AT3G22830 56.0 4.6e-63 239.2
Car16g01108 CST 13 242 HSF AT3G22830 55.6 1.3e-62 237.7
Car05g01314 CST 67 269 HSF AT3G22830 50.2 6.6e-54 208.8
Car02g00041 . 5 105 HSF AT3G22830 69.3 4.3e-37 152.9
Car19g00018 . 29 324 HSF AT3G51910 50.3 1.7e-66 250.0
Car14g01574 CST 29 244 HSF AT3G51910 58.5 8.1e-64 241.1
Car05g00076 . 31 248 HSF AT3G51910 51.8 9.9e-54 207.6
Car12g00591 CST 29 245 HSF AT3G51910 50.7 2.2e-53 206.5
Car14g01574 CST 31 233 HSF AT3G63350 52.9 1.9e-52 203.4
Car05g00076 . 20 231 HSF AT3G63350 50.9 6.2e-51 198.4
Car12g00591 CST 18 228 HSF AT3G63350 50.9 1.5e-49 193.7
Car17g01136 . 42 230 HSF AT1G67970 51.1 1.0e-45 181.4
Car05g01314 CST 72 266 HSF AT5G54070 50.5 2.4e-49 193.4
Car03g00881 CST 2 302 HSF AT4G36990 51.7 3.0e-69 259.2
Car16g00120 CCT,CST 15 113 HSF AT4G36990 66.7 3.0e-37 152.9
Car16g00120 CCT,CST 15 241 HSF AT5G62020 51.2 2.0e-47 186.8
Car05g00150 CCT 104 202 HSF AT5G62020 66.7 2.9e-38 156.4
Car02g01238 . 16 333 HSF AT4G11660 50.9 1.2e-78 290.8
Car15g01090 CCT 16 339 HSF AT4G11660 53.1 2.3e-72 270.0
Car05g00150 CCT 103 208 HSF AT4G11660 71.7 2.0e-44 177.2
Car03g00881 CST 2 107 HSF AT4G11660 71.7 1.9e-42 170.6
Car07g00700 CST 5 102 HSF AT4G11660 69.4 2.8e-38 156.8
Car16g01108 CST 33 126 HSF AT4G11660 69.1 1.5e-36 151.0
Car10g00809 . 24 123 HSF AT4G11660 65.0 2.0e-36 150.6
Car03g00046 . 16 215 HSF AT2G41690 51.1 8.3e-52 201.1
Car06g00746 . 20 212 HSF AT2G41690 50.7 4.0e-46 182.2
Car05g00150 CCT 106 467 HSF AT1G46264 54.0 7.9e-88 321.2
Car01g01429 CCT 13 291 HSF AT1G46264 50.8 1.2e-64 244.2
Car10g00809 . 27 206 HSF AT1G46264 56.5 7.0e-52 201.8
Car03g00881 CST 4 198 HSF AT1G46264 50.2 4.2e-49 192.6
Car16g01108 CST 33 136 HSF AT1G46264 73.1 9.4e-41 164.9
Car06g00570 CST 33 138 HSF AT1G46264 71.7 6.1e-40 162.2
Car02g00041 . 5 105 HSF AT1G46264 68.3 6.3e-37 152.1
Car06g01187 CST 32 136 HSF AT1G46264 64.8 1.8e-36 150.6
Car17g01136 . 32 150 HSF AT1G46264 56.9 2.4e-36 150.2
Car11g00485 CCT,CST 11 178 HSF AT3G24520 67.3 1.4e-62 237.3
Car05g01251 CCT 11 181 HSF AT3G24520 64.3 1.7e-60 230.3
Car17g01136 . 40 228 HSF AT4G17750 59.7 6.8e-61 232.3
Car14g01574 CST 43 247 HSF AT4G17750 57.0 1.7e-59 227.6
Car05g00076 . 18 243 HSF AT4G17750 51.4 3.7e-59 226.5
Car12g00591 CST 7 240 HSF AT4G17750 50.6 4.1e-58 223.0
Car19g00018 . 40 269 HSF AT4G17750 51.2 4.1e-58 223.0
Car06g01187 CST 40 240 HSF AT4G17750 52.8 4.9e-51 199.5
Car13g00464 CCT,ECH 13 192 HSF AT4G17750 50.3 7.6e-44 175.6
Car02g00041 . 12 110 HSF AT4G17750 71.7 2.3e-40 164.1
Car05g00150 CCT 107 205 HSF AT4G17750 71.7 7.3e-39 159.1
Car17g01136 . 41 228 HSF AT5G16820 61.3 1.3e-59 228.0
Car19g00018 . 41 248 HSF AT5G16820 53.3 3.4e-57 219.9
Car14g01574 CST 24 248 HSF AT5G16820 51.7 9.9e-57 218.4
Car12g00591 CST 10 224 HSF AT5G16820 51.6 4.9e-56 216.1
Car05g00076 . 43 227 HSF AT5G16820 55.2 1.2e-54 211.5
Car06g01187 CST 41 245 HSF AT5G16820 50.5 6.4e-48 189.1
Car05g01314 CST 79 262 HSF AT5G16820 52.4 2.1e-46 184.1
Car07g00139 CCT,ECH 120 302 HSF AT5G16820 51.9 1.9e-44 177.6
Car02g00041 . 13 112 HSF AT5G16820 78.0 8.4e-40 162.2
Car16g01108 CST 24 518 HSF AT1G32330 54.1 2.6e-121 433.0
Car06g00570 CST 13 516 HSF AT1G32330 52.3 5.5e-116 415.2
Car17g01136 . 29 228 HSF AT1G32330 55.8 1.5e-60 231.1
Car12g00591 CST 29 221 HSF AT1G32330 53.7 1.0e-53 208.4
Car06g01187 CST 25 252 HSF AT1G32330 52.3 5.6e-52 202.6
Car02g00041 . 11 106 HSF AT1G32330 76.0 2.2e-40 164.1
Car05g00150 CCT 107 204 HSF AT1G32330 71.4 4.6e-38 156.4
Car17g01136 . 41 228 HSF AT3G02990 62.1 1.2e-59 228.0
Car14g01574 CST 44 247 HSF AT3G02990 54.3 3.0e-58 223.4
Car05g00076 . 43 243 HSF AT3G02990 52.7 3.7e-56 216.5
Car12g00591 CST 41 217 HSF AT3G02990 55.4 4.5e-54 209.5
Car02g00041 . 13 106 HSF AT3G02990 77.7 8.2e-40 162.2
Car14g01574 CST 32 243 HSF AT2G26150 57.7 1.9e-65 246.9
Car17g01136 . 29 224 HSF AT2G26150 61.2 5.4e-65 245.4
Car16g01108 CST 3 243 HSF AT2G26150 55.8 1.3e-61 234.2
Car06g00570 CST 8 243 HSF AT2G26150 56.1 6.2e-61 231.9
Car02g00041 . 2 111 HSF AT4G18880 67.3 4.4e-42 169.5
Car06g01187 CST 41 170 HSF AT4G18880 56.0 5.0e-38 156.0
Car14g01712 . 6 446 HSF AT4G13980 52.0 1.8e-111 400.2
Car02g00041 . 4 111 HSF AT4G13980 65.7 2.6e-38 157.1
Car14g01574 CST 32 246 HSF AT5G43840 50.7 1.6e-54 210.3
Car17g01136 . 29 225 HSF AT5G43840 51.8 1.3e-51 200.7
Car12g00591 CST 29 220 HSF AT5G43840 52.6 1.4e-47 187.2
Car19g00018 . 29 344 HSF AT3G22830 51.9 9.2e-88 321.2
Car14g01574 CST 5 253 HSF AT3G22830 59.7 8.0e-84 308.1
Car17g01136 . 1 230 HSF AT3G22830 59.1 1.9e-77 287.0
Car05g00076 . 31 241 HSF AT3G22830 55.9 4.9e-65 245.7
Car06g00570 CST 9 242 HSF AT3G22830 56.0 4.6e-63 239.2
Car16g01108 CST 13 242 HSF AT3G22830 55.6 1.3e-62 237.7
Car05g01314 CST 67 269 HSF AT3G22830 50.2 6.6e-54 208.8
Car02g00041 . 5 105 HSF AT3G22830 69.3 4.3e-37 152.9
Car19g00018 . 29 324 HSF AT3G51910 50.3 1.7e-66 250.0
Car14g01574 CST 29 244 HSF AT3G51910 58.5 8.1e-64 241.1
Car05g00076 . 31 248 HSF AT3G51910 51.8 9.9e-54 207.6
Car12g00591 CST 29 245 HSF AT3G51910 50.7 2.2e-53 206.5
Car14g01574 CST 31 233 HSF AT3G63350 52.9 1.9e-52 203.4
Car05g00076 . 20 231 HSF AT3G63350 50.9 6.2e-51 198.4
Car12g00591 CST 18 228 HSF AT3G63350 50.9 1.5e-49 193.7
Car17g01136 . 42 230 HSF AT1G67970 51.1 1.0e-45 181.4
Car05g01314 CST 72 266 HSF AT5G54070 50.5 2.4e-49 193.4
Car03g00881 CST 2 302 HSF AT4G36990 51.7 3.0e-69 259.2
Car16g00120 CCT,CST 15 113 HSF AT4G36990 66.7 3.0e-37 152.9
Car16g00120 CCT,CST 15 241 HSF AT5G62020 51.2 2.0e-47 186.8
Car05g00150 CCT 104 202 HSF AT5G62020 66.7 2.9e-38 156.4
Car02g01238 . 16 333 HSF AT4G11660 50.9 1.2e-78 290.8
Car15g01090 CCT 16 339 HSF AT4G11660 53.1 2.3e-72 270.0
Car05g00150 CCT 103 208 HSF AT4G11660 71.7 2.0e-44 177.2
Car03g00881 CST 2 107 HSF AT4G11660 71.7 1.9e-42 170.6
Car07g00700 CST 5 102 HSF AT4G11660 69.4 2.8e-38 156.8
Car16g01108 CST 33 126 HSF AT4G11660 69.1 1.5e-36 151.0
Car10g00809 . 24 123 HSF AT4G11660 65.0 2.0e-36 150.6
Car03g00046 . 16 215 HSF AT2G41690 51.1 8.3e-52 201.1
Car06g00746 . 20 212 HSF AT2G41690 50.7 4.0e-46 182.2
Car05g00150 CCT 106 467 HSF AT1G46264 54.0 7.9e-88 321.2
Car01g01429 CCT 13 291 HSF AT1G46264 50.8 1.2e-64 244.2
Car10g00809 . 27 206 HSF AT1G46264 56.5 7.0e-52 201.8
Car03g00881 CST 4 198 HSF AT1G46264 50.2 4.2e-49 192.6
Car16g01108 CST 33 136 HSF AT1G46264 73.1 9.4e-41 164.9
Car06g00570 CST 33 138 HSF AT1G46264 71.7 6.1e-40 162.2
Car02g00041 . 5 105 HSF AT1G46264 68.3 6.3e-37 152.1
Car06g01187 CST 32 136 HSF AT1G46264 64.8 1.8e-36 150.6
Car17g01136 . 32 150 HSF AT1G46264 56.9 2.4e-36 150.2
Car11g00485 CCT,CST 11 178 HSF AT3G24520 67.3 1.4e-62 237.3
Car05g01251 CCT 11 181 HSF AT3G24520 64.3 1.7e-60 230.3
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001764 2 9 2 2 1 2 2 2 2 2 2 2 2 2 2 2 2 1 2 2 2 2 2 2 2 1 2 5 4 2 69
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
4533 PF00447 HSF_DNA-bind 3.10E-30 CL0123 Car TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Car13g00464 Car_Chr13 FPKM 2.356441 2.344836 3.427994 3.595306 2.726455 3.352785 3.47587 2.630572 3.127331 3.297463