Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car13g00466 ATGGCTGCCGCTGCGATTTTCTCGTCTTTACGGAGAAGGAGATCGCCGTCCTTGGAGGTATTTTTGGCCCCTGTTGACCTCTCCGATGTGGCCTTAGTTCGAACCCTGGCGGTAGTTGCGACGGAGCTCGTTTCCCGATTTTCTCAGAAATCCTTCTTCTTTCAGCGGAGGAATTCGCGATCTCTGATAAGGAAACTGGAGGTGTGTTTAGTCTTTTTGGACTGTTTGAAGGATTCCGGTGCTACTTTGCCTCACACAGCGTTGCTCTGTTTGAAGGAGCTTTATTTGTTGTTGTATCGGTCGAAGATACTCCTTGATTATTGCTCCGAATCTAGTAAGTTATGGATGTTGCTTCAGAACCACTCGATTTCGGGGCATTTCAATGATTTGAATTTGGAGTTGTTGACATTTTTTGATGTTTTCCCTTTTGAGGAAGTTGAATTAGCTGTGGATGTTAGAGAACAGGTTGAGCTCTTGCAAAAGCAATTGAGAAGGACTAGGATGTTTGTTGATGAATGCGACGAGGTGTTGAGGGCGCACTTCCTTTCGTTTCTCGACGAATTTGAGAACGGGAGGCTTCCGAATCCGAGGGAATTGAGGGAATTTTTTGTGGATAAGTTGAAGATTCGGAATGCTAAGTGTTGTAGAGCTGAAATTGAGTTCTTGGAGGAGCAGATTGTCAATCATGAGGGCGACGTTGAGCCAACCTTAGCAGTGTTAAATGGTTTTGTTGCTTTTACTAGATACAGTAGATTTCTCCTCTTCGGATTTGAGGAAGATGAAGTTGATTCAGGTGCAGGGAACCAGAAGAAGCTGAAGAAGAACTTGATTAGCCAGGAGATTGCTGAGACGCTTTTAACGATTCCGAGGGACTTCTGCTGCCCGATATCACTGGATTTGATGAATGATCCGGTGATCATTTCTACAGGTCAGACATATGACCGCAGTTCGATTACTAGATGGATGGAAGAAGGGCACAGCACTTGCCCAAAGACGGGGCAATTGCTCGTCCATACCCGCCTCGCTCCCAACCGCGCGTTAAGGAATTTGATCATCCAATGGTGCATTGCCCATGGAGTTCCTTATGATCCACCAGAAGGAATGGATGCATCTGCTGAAAGTTATGCAATGGCTTCTCCAACACGTGCTGCGCTCGAAGCCAACAGAGCAACAGCTATAATCCTTATTCAACAGTTATCAATCGGATCGCAAGATGCAAAGTCGATTGCTGCTCGTGAGATTCGTTTGTTGGCCAAAACAGGGAAAGAGAATCGTGCGTTCATCGCAGAAGCCGGTGCGATCCCCCATCTTCAAAAGTTGCTGGCTTCCCCAAACCCAGTTGCACAGGAGAATTCAGTGACTGCTATGCTTAATCTCTCAATATATGACAAGAACAAAAGTTTGATTATGAGTGAGGTAGGGTGTTTAGGATCGATAACCGAAGTGTTGAGATCTGGACATAGTACAGAAGCACGGGAAAACGCCGCAGCTACGTTGTTCAGCCTCTCTGCAGTTCATGACTACAAGAAGAGAATAGCAGAGGAGAGTGGTGCAGTTGAAGCCTTGGCAGGGTTGTTGAGAGATGGTACCCCAAGAGGAAAGAAGGACGCTGTAACAGCTTTGTTTAATCTCTCGACGCATACCGATAACTGCGTTCAGATGATAGAGGCCGGAGCAGTAACAGCGCTTGTAGGAGCATTGGGGAACGAAGGTGTTGCTGAGGAAGCAGCTGGTGCATTGGCCTTGATTGTTAGACAGCCCGTTGGAGCCGAAGCAGTCGCTAAAGAGGAGAGATCTGTGGCAGGATTAATAGCAATGATGCGATGTGGTACACCAAGAGGAAAAGAGAATGCAGTAGCAGCTTTGCTCGAGTTATGCCGGAGTGGAGGCGCTGCCACGACCGAGCAAGTGTTCAAGGCTCCCGCTTTGGCTGGGTTGCTCCAAATGCTCCTATTTACCGGTACCAAGCGAGCAAGAAGAAAGGCTGCTTCGCTAGCTCGAGTGTTCCAAAGATGTGAGCATGTCGTAATGCATGGGGTTGGTTATGCCTATCCAAGTAACTCGGCTTCTAACAGGGACTCCAGCTTTGCTAGCGAGGTATCTGTGCCGATATCCATCTCAGTACCGGTCGTGTAG 2136 47.52 MAAAAIFSSLRRRRSPSLEVFLAPVDLSDVALVRTLAVVATELVSRFSQKSFFFQRRNSRSLIRKLEVCLVFLDCLKDSGATLPHTALLCLKELYLLLYRSKILLDYCSESSKLWMLLQNHSISGHFNDLNLELLTFFDVFPFEEVELAVDVREQVELLQKQLRRTRMFVDECDEVLRAHFLSFLDEFENGRLPNPRELREFFVDKLKIRNAKCCRAEIEFLEEQIVNHEGDVEPTLAVLNGFVAFTRYSRFLLFGFEEDEVDSGAGNQKKLKKNLISQEIAETLLTIPRDFCCPISLDLMNDPVIISTGQTYDRSSITRWMEEGHSTCPKTGQLLVHTRLAPNRALRNLIIQWCIAHGVPYDPPEGMDASAESYAMASPTRAALEANRATAIILIQQLSIGSQDAKSIAAREIRLLAKTGKENRAFIAEAGAIPHLQKLLASPNPVAQENSVTAMLNLSIYDKNKSLIMSEVGCLGSITEVLRSGHSTEARENAAATLFSLSAVHDYKKRIAEESGAVEALAGLLRDGTPRGKKDAVTALFNLSTHTDNCVQMIEAGAVTALVGALGNEGVAEEAAGALALIVRQPVGAEAVAKEERSVAGLIAMMRCGTPRGKENAVAALLELCRSGGAATTEQVFKAPALAGLLQMLLFTGTKRARRKAASLARVFQRCEHVVMHGVGYAYPSNSASNRDSSFASEVSVPISISVPVV 711
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 6978249 6980384 - Carg19897-RA Car13g00466 159383
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car13g00466 711 ProSiteProfiles U-box domain profile. 287 361 IPR003613 GO:0004842|GO:0016567
Car13g00466 711 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 517 559 IPR000225 GO:0005515
Car13g00466 711 Pfam U-box domain 288 358 IPR003613 GO:0004842|GO:0016567
Car13g00466 711 Coils Coil 212 232 - -
Car13g00466 711 Pfam Armadillo/beta-catenin-like repeat 422 460 IPR000225 GO:0005515
Car13g00466 711 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 432 474 IPR000225 GO:0005515
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Car13g00466 Car18g00408 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car13g00466 Car-Chr13:6978249 Car15g00153 Car-Chr15:845062 2.39E-132 dispersed
Car13g00466 Car-Chr13:6978249 Car18g00408 Car-Chr18:2545138 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car13g00466 - - csv:101204151 1181.39