Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car13g00481 ATGGAGAAGAAGAGTTCCATTTTAATGCAAAGGTACGAGCTTGGGAGGATGCTTGGGCAGGGCACTTTTGCCAAAGTCTACCATGCTCGTAACCTTAAGTCAGGCCAGAGCGTGGCCATCAAGGTCATTAATAAAGAGAAAGTGATGCGTGTTGGGTTGATCGACCAAATCAAGAGGGAAATCTCTGTGATGCGCCTTGTTCGCCATCCCAATGTAGTGCAGCTTTACGAGGTCATGGCTAGCCGGACCAAGATCTATTTTGCCATGGAGTATGTCAAAGGTGGGGAGCTTTTTGATAAGGTGGCTGAAGGGAAGCTCAAGGAAGACGCTGCTCGTAAGTACTTTCAGCAGCTCATTGGCGCTGTTGATTATTGCCATAGCCGTGGCGTCTACCATAGAGATATCAAGCCTGAAAATCTCCTCCTTGATGAGTTTGGGAATCTCAAGATTTCTGATTTTGGGTTGAGTGCTTTGGCTGAGTCTAGGCGGCAAGATGGGCTTCTTCATACCACTTGCGGCACCCCTGCCTATGTCGCCCCTGAAGTCATCAACAAGAAAGGGTACGATGGAGCTAAAGCTGACATTTGGTCATCTGGGGTTGTCCTGTTTGTTCTTCTGGCGGGTTATCTCCCTTTCCACGACCCAAATCTAATGGAAATGTACAGAAAAATCTCGAGAGGAGAATTCAAATGCCCTCACTGGTTTCCCCCAGAAGTTCGCAAGCTGCTCTCAAGAATCCTAGACCCAAATCCACAAACCAGAATAAAAATGGCCAAACTAATGGAAAATTCATGGTTCAAAAAGGGTTTCAGCGCAAATGTAGCAACTCCAAAGCCGCTTCAAATCAACGGAAACATGTCGGGTGTGAGCGACGTCCACATCGATTTCGACGACAGCAGCTCGGAGGAAGGCTCTGTTAGTACCAGCAACGAGAGTGGAACACCACCAGCAGGCAGAACCCCAAGGAGAAACCATTCCTTCAATGCATTCGACATCATATCTCTGTCGCCAGGTTTTGATCTGTCGGGTCTGTTCGAGAGCGACGTGAATGAGAGGCCGCAGTCACGTTTCACGACAACGAAGCCAGAGTCGGCGATCGTGTCGAAGTTTGAAGAGATAGCAGAAATGGAAAGGTTCAAGGTGATGAAGAAAGATGGGTTAGTGAAACTGCAGGGGAGCAAACAGGGGAGAAAAGGACAATTGGCTATAGACGCAGAGATATTTGAAGTGACGCCTTCATTTTTTGTGGTGGAGGTGACGAAAACAGCAGGGGACACATTGGAATACAGGAAATTTTACGACAAAGACATGAGGCCTTGCCTTAAGGACATTGTGTGGACTTGGGAAGGAAATGAACAACCAACCACATAA 1371 47.56 MEKKSSILMQRYELGRMLGQGTFAKVYHARNLKSGQSVAIKVINKEKVMRVGLIDQIKREISVMRLVRHPNVVQLYEVMASRTKIYFAMEYVKGGELFDKVAEGKLKEDAARKYFQQLIGAVDYCHSRGVYHRDIKPENLLLDEFGNLKISDFGLSALAESRRQDGLLHTTCGTPAYVAPEVINKKGYDGAKADIWSSGVVLFVLLAGYLPFHDPNLMEMYRKISRGEFKCPHWFPPEVRKLLSRILDPNPQTRIKMAKLMENSWFKKGFSANVATPKPLQINGNMSGVSDVHIDFDDSSSEEGSVSTSNESGTPPAGRTPRRNHSFNAFDIISLSPGFDLSGLFESDVNERPQSRFTTTKPESAIVSKFEEIAEMERFKVMKKDGLVKLQGSKQGRKGQLAIDAEIFEVTPSFFVVEVTKTAGDTLEYRKFYDKDMRPCLKDIVWTWEGNEQPTT 456
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 7049770 7051236 - Carg19882-RA Car13g00481 159398
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car13g00481 456 ProSiteProfiles NAF domain profile. 322 346 IPR018451 GO:0007165
Car13g00481 456 Pfam Protein kinase domain 12 266 IPR000719 GO:0004672|GO:0005524|GO:0006468
Car13g00481 456 MobiDBLite consensus disorder prediction 293 324 - -
Car13g00481 456 ProSitePatterns Serine/Threonine protein kinases active-site signature. 130 142 IPR008271 GO:0004672|GO:0006468
Car13g00481 456 MobiDBLite consensus disorder prediction 301 324 - -
Car13g00481 456 Pfam NAF domain 326 383 IPR004041 GO:0007165
Car13g00481 456 ProSiteProfiles Protein kinase domain profile. 12 266 IPR000719 GO:0004672|GO:0005524|GO:0006468
Car13g00481 456 ProSitePatterns Protein kinases ATP-binding region signature. 18 41 IPR017441 GO:0005524
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Car07g00152 Car13g00481 CCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car03g00265 Car-Chr3:3839361 Car13g00481 Car-Chr13:7049770 0 dispersed
Car05g01160 Car-Chr5:11060904 Car13g00481 Car-Chr13:7049770 0 dispersed
Car07g01185 Car-Chr7:7195590 Car13g00481 Car-Chr13:7049770 0 dispersed
Car09g00364 Car-Chr9:1988779 Car13g00481 Car-Chr13:7049770 2.29E-178 dispersed
Car12g01122 Car-Chr12:10933078 Car13g00481 Car-Chr13:7049770 0 dispersed
Car13g00407 Car-Chr13:6590710 Car13g00481 Car-Chr13:7049770 1.24E-168 dispersed
Car13g00481 Car-Chr13:7049770 Car18g00395 Car-Chr18:2439682 0 wgd
Car13g00481 Car-Chr13:7049770 Car03g01191 Car-Chr3:9389559 0 wgd
Car13g00481 Car-Chr13:7049770 Car07g00152 Car-Chr7:901940 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
89273 PF00069 Pkinase 3.80E-73 CL0016 Car PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car13g00481 K07198 - csv:101206082 805.823