Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car13g00488 ATGATGATGGCAGAGAGAAAGAAGAACGATGAAGATCATGAGGGAGGAATTAAGCTGTTTGGGGCCACTATTATGTTGCACGACAACCGGATACTTAAAGAAGAGCCCAACGTTTCAGATCAACAATCGCCAGAAAAAAGGCCTGACAAGATCATCCCCTGTCCGAGATGCAAAAGCATGGACACCAAATTTTGTTACTTCAATAATTACAATGTTAATCAACCACGCCATTTCTGTAAGGGCTGCCAGAGGTACTGGACCGCCGGTGGGGCCCTCCGTAATGTCCCTGTTGGAGCCGGCCGCCGAAAAACCAAACCCCCTTGCCAGACTTTTGGTGGGTTGCCGGAAAATTGCGTCTTTGATTCTTCAGGGATCGTGGCGGTGCAGCCGTTTGAGTTGGAAGGGATGGTTGAGGAGTGGCATGTCGTCGCTGCAGCTGCACAGGATGGGTTCCGGCAAATTTTACCGGTAAAGCGACGGAGGGGTTACCAAGACGGTCAAATCTGTTGA 510 50.0 MMMAERKKNDEDHEGGIKLFGATIMLHDNRILKEEPNVSDQQSPEKRPDKIIPCPRCKSMDTKFCYFNNYNVNQPRHFCKGCQRYWTAGGALRNVPVGAGRRKTKPPCQTFGGLPENCVFDSSGIVAVQPFELEGMVEEWHVVAAAAQDGFRQILPVKRRRGYQDGQIC 169
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 7090732 7091241 + Carg19875-RA Car13g00488 159405
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car13g00488 169 PANTHER CYCLIC DOF FACTOR 2 12 161 IPR045174 GO:0003700|GO:0006355
Car13g00488 169 PANTHER DOF ZINC FINGER PROTEIN DOF1.5-LIKE 12 161 - -
Car13g00488 169 Pfam Dof domain, zinc finger 50 105 IPR003851 GO:0003677|GO:0006355
Car13g00488 169 ProSitePatterns Zinc finger Dof-type signature. 54 90 IPR003851 GO:0003677|GO:0006355
Car13g00488 169 ProSiteProfiles Zinc finger Dof-type profile. 52 106 IPR003851 GO:0003677|GO:0006355
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Car07g00157 Car13g00488 CCT
Car03g01185 Car13g00488 CCT
Car13g00488 Car18g00388 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car13g00488 Car-Chr13:7090732 Car14g00485 Car-Chr14:2606480 7.05E-38 dispersed
Car13g00488 Car-Chr13:7090732 Car18g00388 Car-Chr18:2375129 3.82E-85 wgd
Car13g00488 Car-Chr13:7090732 Car03g01185 Car-Chr3:9370387 9.49E-54 wgd
Car13g00488 Car-Chr13:7090732 Car07g00157 Car-Chr7:943823 1.84E-54 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
4535 PF02701 zf-Dof 4.20E-32 No_clan Car TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car13g00488 - - csv:101204978 290.812