Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car13g00509 ATGCTTCTCCTCTTCTTCTTCTTCTTCTTCTTCACCTTCCTCTCAAACCCTTCTCTCCTCTCCTTCTCTCTAACCCAAGAAGGCCTTTACCTCCACACCATCAAGCTCTCACTCGACGACCCAGATTCCTCCCTCCGTTCATGGAACGACCGCGACCACACTCCCTGCTCCTGGTTCGGCGTCTCTTGCGACCCTCAAACCAACTCCGTCCACTCCCTCGACCTCTCCAACACCAACATCGCCGGCCCATTCCCCACCCTTCTCTGCCGCCTCCAGAATCTCTCGTTCCTTTCCCTCTACAACAACTCCATCAACATGTCCCTTCCCTCTCTTATTTCAGATTGTTCCAGTCTCCAGCATCTCGACCTCTCTCAGAATCTCCTCACCGGCGCGCTGCCGAGTTCGATTGCCGATCTCCCCAACCTTCGCTATTTGGATTTGACTGGGAATAACTTCTCCGGAGATGTTCCGCCTAGTTTCGCTCGGTTTCGGAAGTTGGAGGTTTTGTCTCTTGTTTTTAATATTCTCGATGGACCCATGCCGGCGTTTCTCGGTAATATTACGTCGTTGAAGATGTTGAACCTGTCTTACAACCCGTTTGCGCCGAGTCGGATCCCGCCGGAGTTTGGGAATTTGACGAATCTTGAGGTGCTTTGGGTGACTCAGTGTAATTTGATTGGGGAAATTCCGAACTCTCTTGGTCGGTTGAAGCGGCTTACTGATTTGGACTTGGCGTTGAATAATCTTTATGGTCCGATTCCAAGGTCGCTTACGGATTTGAGTAGCGTGGTTCAGATTGAGTTGTATAATAACTCGTTAACCGGTGAGTTGCCTTCTGGGTTTTCGAATCTGACCTCACTGCGACTGTTTGACGCGTCGATGAACAGTTTGACTGGGTCGATTCCGGATGAGCTGTGTCAGCTGCCGCTTGAGAGTCTTAATCTCTACGAGAACAAGTTTGAGGGGAAGTTACCGGAAAGCATTGCCAACTCGCCGGGTTTGTACGAACTCAGGCTGTTCAGTAACCGTCTCACTGGCGGTTTACCGCCAAATCTTGGAAAGAACTCGCCATTGAGATGGATTGATGTTTCTAACAACCAGTTTTCGGGGGAAATCCCGGGGGATTTGTGTGAGAAGGGAGCGTTAGAGGAACTTCTGATGATTAACAACCAGTTTTCCGGGGAGATCCCGGCGAGTTTAGGTGAGTGTAAAAGTCTCACGAGGGTGCGATTGGGTTACAATCGATTTTCCGGCGAGGTGCCGGCGGGTTTTTGGGGGCTCCCACATGTGTATTTGTTGGAGCTGGTGAGTAACTCATTTTCTGGGCATATTTCGGATGCCATAGCCACTGCGAAGAACCTTTCGATTTTCATCATCTCTAAGAACAACTTCACCGGCACATTACCGGCGGAGATGGGACGGCTGGACAATCTTGTAAAGTTGCTAGCGACTGATAACAAACTCAGTGGGTCATTACCAGGGAGTCTCGTGAATCTTGGGCATCTTTCGAGCTTGGATCTTCGAAATAATGAACTCTCTGGGGAACTTCCCAGTGGAATCAAGTCGTGGAAGAATCTGAACGAACTCAGTTTGGCAAACAATGGATTCACCGGCGAAATCCCTGAAGAAATCGGGGACTTGCCGGTTCTCAATTACCTTGATCTGTCGGGAAACATGTTTTCTGGGAACATCCCTGTCGGACTACAGAATTTGAAGCTCAATCTGCTCAATCTATCGAACAATCACTTGTCAGGTGAGCTTCCCCCATTTTTAGCTAAGGAAATCTACAGAAATAGCTTTTTAGGGAATCCAGATTTGTGTGGACATTTGGGAAGTTTGTGCAACAGCAAAGGTGAAGAAGCTAAAAGCGTAGGCTCTCTCTGGTTGTTGCTATCGATCTTCTTCCTCGCCGGTATCGTGTTTATCATCGGCGTCGTCTGGTTTTACCTCAAATACAGGAAGTTTAAGGCGGCAAAGAGAGAAATGGAGAAGGGGAAATGGACATTGATGTCCTTCCACAAGTTGGATTTCCGTGAATATGAGATCTTAGATTGTCTGGATGAAGATAACATCATAGGCAGTGGCTCTTCTGGTAAAGTTTACAAGGTTGTGCTCAACAATGGCGAGGCCGTTGCTGTTAAGAAGCTGTTCGGAGGGACGAGGAAAGAGGGCGAAAAAGGCGGCGATGTCGAGAAGGGTCAAGTTCTTCAAGACTATGGATTCGAAGCTGAAATCAATACTCTGGGAAAGATTAGGCACAAGAACATTGTGAAGTTATGGTGCTGCTGTGTTACAAGAGACTACAAGCTTTTGGTCTATGAATACATGGCTAATGGAAGCTTGGGAGATTTGCTTCATAGCAGTAAAAAAGGAGTGCTTGATTGGCCTACCAGGTTTAAGATAGCTTTAGATGCTGCAAAAGGACTCTCTTATCTTCATCACGATTGCACCCCTCCAATTGTTCATCGAGACGTTAAGTCGAACAATATCTTGTTGGATAGCGATTTTGGAGCACGGTTAGCCGATTTCGGCGTGGCCAAGGTCATCGATTCAACTGCGAAAGGGCCTAAATCCATGTCGGTAATCGCAGGATCTTGCGGTTATATCGCGCCTGAGTATGCTTACACACTCCGTGTCAACGAAAAAAGCGACATATACAGCTTCGGCGTGGTGATCCTGGAACTAATAACCGGGAGGCTCCCGATCGATCCAGTGTTCGGGGAGAAAGACCTGGTGAAATGGGTGTGTTTCACATTGGATCAAGACGGGATCGACGAGGTGATCAACCCGAAACTGGATAAGTGTTTCAAGGAAGAAATATGCAGAGTGCTGAACATTGGGCTGCTATGCACCAGCCCTCTTCCCATCAACCGGCCATCAATGAGAAAAGTGGTGAAAATGCTGGAAGAAGTTGGGGCAGAGAACCAATTGAAAACCAACAATAAAGATGGGAAGCTAACTCCTTACTATTACCAAGATTCCTCTGATCAGGGAAGTGTAGCGTAG 3006 47.8 MLLLFFFFFFFTFLSNPSLLSFSLTQEGLYLHTIKLSLDDPDSSLRSWNDRDHTPCSWFGVSCDPQTNSVHSLDLSNTNIAGPFPTLLCRLQNLSFLSLYNNSINMSLPSLISDCSSLQHLDLSQNLLTGALPSSIADLPNLRYLDLTGNNFSGDVPPSFARFRKLEVLSLVFNILDGPMPAFLGNITSLKMLNLSYNPFAPSRIPPEFGNLTNLEVLWVTQCNLIGEIPNSLGRLKRLTDLDLALNNLYGPIPRSLTDLSSVVQIELYNNSLTGELPSGFSNLTSLRLFDASMNSLTGSIPDELCQLPLESLNLYENKFEGKLPESIANSPGLYELRLFSNRLTGGLPPNLGKNSPLRWIDVSNNQFSGEIPGDLCEKGALEELLMINNQFSGEIPASLGECKSLTRVRLGYNRFSGEVPAGFWGLPHVYLLELVSNSFSGHISDAIATAKNLSIFIISKNNFTGTLPAEMGRLDNLVKLLATDNKLSGSLPGSLVNLGHLSSLDLRNNELSGELPSGIKSWKNLNELSLANNGFTGEIPEEIGDLPVLNYLDLSGNMFSGNIPVGLQNLKLNLLNLSNNHLSGELPPFLAKEIYRNSFLGNPDLCGHLGSLCNSKGEEAKSVGSLWLLLSIFFLAGIVFIIGVVWFYLKYRKFKAAKREMEKGKWTLMSFHKLDFREYEILDCLDEDNIIGSGSSGKVYKVVLNNGEAVAVKKLFGGTRKEGEKGGDVEKGQVLQDYGFEAEINTLGKIRHKNIVKLWCCCVTRDYKLLVYEYMANGSLGDLLHSSKKGVLDWPTRFKIALDAAKGLSYLHHDCTPPIVHRDVKSNNILLDSDFGARLADFGVAKVIDSTAKGPKSMSVIAGSCGYIAPEYAYTLRVNEKSDIYSFGVVILELITGRLPIDPVFGEKDLVKWVCFTLDQDGIDEVINPKLDKCFKEEICRVLNIGLLCTSPLPINRPSMRKVVKMLEEVGAENQLKTNNKDGKLTPYYYQDSSDQGSVA 1001
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 7177936 7181387 - Carg21518-RA Car13g00509 159426
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car13g00509 1001 ProSitePatterns Protein kinases ATP-binding region signature. 692 715 IPR017441 GO:0005524
Car13g00509 1001 ProSitePatterns Serine/Threonine protein kinases active-site signature. 820 832 IPR008271 GO:0004672|GO:0006468
Car13g00509 1001 Pfam Protein kinase domain 688 903 IPR000719 GO:0004672|GO:0005524|GO:0006468
Car13g00509 1001 ProSiteProfiles Protein kinase domain profile. 686 971 IPR000719 GO:0004672|GO:0005524|GO:0006468
Car13g00509 1001 Pfam Leucine rich repeat N-terminal domain 26 64 IPR013210 -
Car13g00509 1001 Pfam Leucine rich repeat 93 152 IPR001611 GO:0005515
Car13g00509 1001 Pfam Leucine Rich Repeat 214 235 IPR001611 GO:0005515
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Car13g00509 Car18g00370 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car11g00532 Car-Chr11:2878304 Car13g00509 Car-Chr13:7177936 0 dispersed
Car13g00509 Car-Chr13:7177936 Car19g00389 Car-Chr19:5706454 0 dispersed
Car04g00796 Car-Chr4:4595252 Car13g00509 Car-Chr13:7177936 0 transposed
Car11g01485 Car-Chr11:11993793 Car13g00509 Car-Chr13:7177936 0 transposed
Car13g00509 Car-Chr13:7177936 Car18g00370 Car-Chr18:2281232 0 wgd
Car13g00509 Car-Chr13:7177936 Car03g01156 Car-Chr3:9234438 3.81E-27 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
89274 PF00069 Pkinase 1.30E-42 CL0016 Car PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car13g00509 - - csv:101213542 1750.33