Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Car13g00514 | ATGGCTTCCACTCGCGAGGCTCACTACAGGGGCGTCAGAAAGAGGCCATGGGGTCGCTACGCCGCTGAGATTCGCGACCCTTGGAAGAAGACCCGTGTCTGGTTGGGCACTTTCGATACCCCTGAAGAAGCCGCCCTTGCTTACGACGGTGCCGCCAGGTCCCTCCGCGGCTCCAAAGCCAAGACCAACTTCCCTCCCCCTCTCTCCCTCGACCTCAACGTCTCCTCCACTCCTACAACCTGCAACTGGCCTTCCTCCTCCTCCTCCTCCGCCGCCGCCGCCGCCGCCCCTTCCTCCTCCTCCTCCTCCTCCGCCGCTCGTCTTCTCCTCGGCGATTTCCTCCGCCACGGCGCTCGCAACGACTTGTGTAATGTCAATGTGGAGGCCTCTCCGGGACTGGTGGACTCGAGCGATCCAGCGCCCAACACTACGGCGTCGTTTATGGGGCACGTGCGTCGTGGCCTCCCCTTTGATCTGAACGAGCCTCCTCCGGTGTGGCTATGA | 504 | 63.49 | MASTREAHYRGVRKRPWGRYAAEIRDPWKKTRVWLGTFDTPEEAALAYDGAARSLRGSKAKTNFPPPLSLDLNVSSTPTTCNWPSSSSSSAAAAAAPSSSSSSSAARLLLGDFLRHGARNDLCNVNVEASPGLVDSSDPAPNTTASFMGHVRRGLPFDLNEPPPVWL | 167 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 13 | 7219451 | 7219954 | - | Carg21513-RA | Car13g00514 | 159431 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Car13g00514 | 167 | MobiDBLite | consensus disorder prediction | 77 | 101 | - | - | |
| Car13g00514 | 167 | ProSiteProfiles | AP2/ERF domain profile. | 8 | 65 | IPR001471 | GO:0003700|GO:0006355 | |
| Car13g00514 | 167 | Pfam | AP2 domain | 8 | 57 | IPR001471 | GO:0003700|GO:0006355 |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Car08g00511 | Car-Chr8:3232129 | Car13g00514 | Car-Chr13:7219451 | 1.16E-26 | dispersed | |
| Car13g00514 | Car-Chr13:7219451 | Car20g00207 | Car-Chr20:1191194 | 1.14E-32 | dispersed | |
| Car11g01596 | Car-Chr11:12622845 | Car13g00514 | Car-Chr13:7219451 | 2.61E-33 | wgd | |
| Car13g00514 | Car-Chr13:7219451 | Car18g00363 | Car-Chr18:2243213 | 6.30E-75 | wgd | |
| Car13g00514 | Car-Chr13:7219451 | Car19g00827 | Car-Chr19:8807044 | 8.10E-31 | wgd | |
| Car13g00514 | Car-Chr13:7219451 | Car19g00789 | Car-Chr19:8566593 | 1.87E-30 | wgd | |
| Car13g00514 | Car-Chr13:7219451 | Car03g01147 | Car-Chr3:9195972 | 6.75E-31 | wgd | |
| Car13g00514 | Car-Chr13:7219451 | Car07g00193 | Car-Chr7:1089981 | 2.69E-31 | wgd |
Transcription factors information
| Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
|---|---|---|---|---|---|---|---|
| 4539 | PF00847 | AP2 | 1.80E-14 | CL0081 | Car | TF |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Car13g00514 | - | - | csv:101212815 | 243.432 |