Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car13g00526 ATGGCCGCTCTGAAACTCCCAATTCTTCTCCTCTCTTTCCCCGTTCTTTTCTGCTCCATATCCGCCCTTGATTTCGTCTTCAACGGCTTCAATTCCACCGATGTCTTCCTCTACGGCAACGCCACCATTGAATCCCGCATCCTCGCCCTCACCAACCAAACCAGTTTCTCAATCGGTCGCGCTCTGTACCCTTCCAAGATCCCCACTAGGGCTCCCAATTCCTCCCGCCTCTACTCTTTCTCCACTTCTTTCATCTTCGCCATGGCCCCTTACAGGGATACCCTTCCCGGACATGGCTTGGTTTTTATCTTTGTTCCGGAGACTGGGATTCACGGAACTGCCTCCGCTCAGAATTTGGGGTTTTTGAACTTCACCCTTAATGGGAACCCTAATAACCATGTCTTTGGAATTGAATTCGATGTGTTTGATAATGAGGAATTCAATGACCCCGACGACAATCATGTGGGAATCGACTTGAATTCCTTGACGTCTACCGCTACCAGAGAAGCTGGGTTTTGGTCCGACGATGGCTCGTTTAATAGGTTCCGGCTTAATAGCGGCGAAAATTATCAAGTCTGGATTGATTATTCCGATTTTCAGATGAATGTTACGATGGCTCCGGCGGGGATGAAGAGGCCACGGCGGCCGTTGATTAACGCCTCTCTGAATCTCTCCCATGTTTTCACCGACGAAATGTATGTGGGGTTTACGAGCTCTACAGGGCAGTTGGTTCAAGGCCACAACATTTTAGCCTGGAGTTTCAGTAACTCTAATTTTTCGTTGAGCGAGAGTTTGATTACCGCTGGATTGCCTTCCTTCGTCCTCCCAGAAGACCCGATTACTAAATCGAAGTGGTTCATCGCCGGAGTGACGGCCGGCGGATTCCTATTCGTTTTCTTCATAGCTACGAGTTTGGGGATTTTGATTGCAGACCACCGGAGGAGAGCGAGGGCAAGAGCGGAAATGGAAGACTGGGAATTGGAGTATTGGCCACACCGAATTCCATATCAAGAAATCGAATCGGCAACCAAAGGGTTTGCAGAAGAAAATGTCATCGGAATTGGAGGGAATGGGAAGGTGCATAAAGGGGTTTTGGCTGGGGGAGGTTCGGAAGTTGCAGTGAAACGAATTTCCCATGAAAACGACGGGATGCGAGAGTTCTTAGCTGAAATTTCGAGTATAGGGAGATTGAAGCACAGAAATCTAGTCAGTTTGAAAGGTTGGTGTAAGAAAGAGACTGGGAATTTCTTACTTGTCTATGATTACATGGAAAATGGTAGTTTAGACAAATGGGTATTTGATTGCGACGAGAGAAACATGTTGAGTTGCGAGGATCGAATTCGAGTATTGAAAAACGTAGCTTCCGGGGTCTTGTATTTACACGAAGGATGGGAATCAAAGGTCCTCCATAGGGACATAAAAGCTAGCAATGTATTGCTGGACAAAGACATGAATGGAAGACTAGGAGATTTTGGTTTGGCTCGAGTCCATAGCCACAACCAAGTAGCTAGCACGACTCGAATCGTTGGCACCATGGGCTATATAGCGCCCGAGTTGATTCGAACGGGACGAGCCTCGACACAATCAGACGTGTTTGGTTTTGGTGTTTTGATTTTGGAAGTAATGTGTGGGAGGAGGCCAATAGAGGAAGGGAAGCCACCATTAGTGGATTGGGTTCGACGATTGGCGGTTGAGGGGGAGATCACAGCAGCAGTCGACGAGCGACTGAAGAAGAAGGGCGGGTGGAACGAGGAGGAAGTCGAGAGAGTGTTGCATTTGGGATTGTTATGTGTACATCCAGACCCGAAAGCTCGACCGAAGATGAGGCAAATTGCGAAAGTTTTGGAAGGAAAAATAGAGATGGATGAGAATGAGAGTGAGAGCATGAATGCTTATTTGCTTGAAAGATTGAAGTCGCAAGGAATGTGGTGTGATTCTGGCGTTGGTTTTGGGCGTAAACATCCAACATTTGAGGATTTTCTTCAGTCTTCTTCAACCTCCCTGTCTTGGTCCGATTCCATTGTAGTGGGCAGGTGA 2037 47.52 MAALKLPILLLSFPVLFCSISALDFVFNGFNSTDVFLYGNATIESRILALTNQTSFSIGRALYPSKIPTRAPNSSRLYSFSTSFIFAMAPYRDTLPGHGLVFIFVPETGIHGTASAQNLGFLNFTLNGNPNNHVFGIEFDVFDNEEFNDPDDNHVGIDLNSLTSTATREAGFWSDDGSFNRFRLNSGENYQVWIDYSDFQMNVTMAPAGMKRPRRPLINASLNLSHVFTDEMYVGFTSSTGQLVQGHNILAWSFSNSNFSLSESLITAGLPSFVLPEDPITKSKWFIAGVTAGGFLFVFFIATSLGILIADHRRRARARAEMEDWELEYWPHRIPYQEIESATKGFAEENVIGIGGNGKVHKGVLAGGGSEVAVKRISHENDGMREFLAEISSIGRLKHRNLVSLKGWCKKETGNFLLVYDYMENGSLDKWVFDCDERNMLSCEDRIRVLKNVASGVLYLHEGWESKVLHRDIKASNVLLDKDMNGRLGDFGLARVHSHNQVASTTRIVGTMGYIAPELIRTGRASTQSDVFGFGVLILEVMCGRRPIEEGKPPLVDWVRRLAVEGEITAAVDERLKKKGGWNEEEVERVLHLGLLCVHPDPKARPKMRQIAKVLEGKIEMDENESESMNAYLLERLKSQGMWCDSGVGFGRKHPTFEDFLQSSSTSLSWSDSIVVGR 678
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 7275249 7277285 - Carg21501-RA Car13g00526 159443
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car13g00526 678 ProSitePatterns Protein kinases ATP-binding region signature. 352 375 IPR017441 GO:0005524
Car13g00526 678 SUPERFAMILY Protein kinase-like (PK-like) 324 616 IPR011009 -
Car13g00526 678 CDD lectin_legume_LecRK_Arcelin_ConA 23 252 IPR001220 GO:0030246
Car13g00526 678 ProSitePatterns Serine/Threonine protein kinases active-site signature. 468 480 IPR008271 GO:0004672|GO:0006468
Car13g00526 678 Gene3D Phosphorylase Kinase; domain 1 308 422 - -
Car13g00526 678 CDD STKc_IRAK 352 617 - -
Car13g00526 678 PANTHER L-TYPE LECTIN-DOMAIN CONTAINING RECEPTOR KINASE VII.1 8 670 - -
Car13g00526 678 PANTHER - 8 670 - -
Car13g00526 678 Pfam Protein kinase domain 347 612 IPR000719 GO:0004672|GO:0005524|GO:0006468
Car13g00526 678 Gene3D Transferase(Phosphotransferase) domain 1 423 638 - -
Car13g00526 678 SUPERFAMILY Concanavalin A-like lectins/glucanases 21 261 IPR013320 -
Car13g00526 678 SMART serkin_6 346 615 IPR000719 GO:0004672|GO:0005524|GO:0006468
Car13g00526 678 Pfam Legume lectin domain 23 258 IPR001220 GO:0030246
Car13g00526 678 Gene3D - 21 264 - -
Car13g00526 678 ProSiteProfiles Protein kinase domain profile. 346 633 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car13g00526 Car-Chr13:7275249 Car14g00101 Car-Chr14:517786 5.65E-166 dispersed
Car11g01570 Car-Chr11:12476942 Car13g00526 Car-Chr13:7275249 0 wgd
Car13g00526 Car-Chr13:7275249 Car18g00348 Car-Chr18:2145325 0 wgd
Car13g00526 Car-Chr13:7275249 Car19g00784 Car-Chr19:8513560 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
89276 PF00069 Pkinase 1.30E-46 CL0016 Car PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car13g00526 - - csv:101222577 1142.87