Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Car13g00552 | ATGAACGACTTATTCTCGAATTCGTTCAAACAATACACGGATCTGAAGCAACAGGCGTCTGTGGACGGCATGGAGTCTGGGAATGAGACTGTGAATTTGGACACGTTCTTCGAGGATGTCGAGAATGTTAAAGACGACATGAAACAGGTCGAGAATTTGTACAAGAAATTGCAACAGAACAATGAGGAATGCAAGATTGTCCACAATGCCAAGACGATGAAGGAGCTGAGGGGCAGAATGGAGGCCGATGTCGCCCAGGTTCTGAAGCGTGTCAAAATGATTAAAGGCAAACTCGAGGCTCTGGATCGTTCCAACGCCGCTCACCGCAGCCTCCCAGGTTGCGGCCCTGGCTCCTCCGCCGACCGAACCCGAACCTCCGTCGTCAGCGGCTTGGGGAAGAAGCTCAAAGATGTCATGGATGAGTTTCAAGGCCTCAGAGGTCGAATGAACGCCGAATACAAAGAAACCATCGAGCGCAGGTACTTCACAGTGACAGGGCAGAAAGCCGACGAAGAGACAATAGAGAACTTGATAGCAAGTGGGGAAAGCGAGAGCTTCCTCCAGAAGGCAATTCAAGAACAGGGGAGGGGTCAGATAATGGACACAATCTCAGAGATTCAGGAGCGACACGACGCTGTGAAGGAGATAGAGAAGAATTTGTTAGAGCTGCATCAAATATTCTTGGACATGGCGGCGCTGGTCGAGGCACAAGGGCACCAGCTGAACGACATCGAGAGCCATGTCGCGCATGCAAACTCGTTCGTGAGAAGAGGAACAGAGCAGCTTCAGGAAGCCAGAGAGATACAGAAGAGCTCGAGGAAGTGGACTTGCTATGCCATTATCTTGGGGGTTGTTCTTATTATCGTCATCCTCTTCCCGATCTTGACTACAATTTTACCTCATTTGTTGTAG | 912 | 50.0 | MNDLFSNSFKQYTDLKQQASVDGMESGNETVNLDTFFEDVENVKDDMKQVENLYKKLQQNNEECKIVHNAKTMKELRGRMEADVAQVLKRVKMIKGKLEALDRSNAAHRSLPGCGPGSSADRTRTSVVSGLGKKLKDVMDEFQGLRGRMNAEYKETIERRYFTVTGQKADEETIENLIASGESESFLQKAIQEQGRGQIMDTISEIQERHDAVKEIEKNLLELHQIFLDMAALVEAQGHQLNDIESHVAHANSFVRRGTEQLQEAREIQKSSRKWTCYAIILGVVLIIVILFPILTTILPHLL | 303 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 13 | 7435500 | 7436487 | - | Carg21475-RA | Car13g00552 | 159469 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Car13g00552 | 303 | Pfam | SNARE domain | 240 | 291 | IPR000727 | - | |
| Car13g00552 | 303 | Gene3D | - | 193 | 298 | - | - | |
| Car13g00552 | 303 | CDD | SNARE_syntaxin1-like | 202 | 264 | - | - | |
| Car13g00552 | 303 | Pfam | Syntaxin | 36 | 238 | IPR006011 | GO:0016020 | |
| Car13g00552 | 303 | CDD | SynN | 33 | 190 | IPR006011 | GO:0016020 | |
| Car13g00552 | 303 | Gene3D | - | 33 | 160 | - | - | |
| Car13g00552 | 303 | SMART | SynN_4 | 28 | 154 | IPR006011 | GO:0016020 | |
| Car13g00552 | 303 | SMART | tSNARE_6 | 198 | 265 | IPR000727 | - | |
| Car13g00552 | 303 | PANTHER | SYNTAXIN | 6 | 295 | IPR045242 | - | |
| Car13g00552 | 303 | PANTHER | SYNTAXIN-124-RELATED | 6 | 295 | - | - | |
| Car13g00552 | 303 | Coils | Coil | 33 | 67 | - | - | |
| Car13g00552 | 303 | ProSitePatterns | Syntaxin / epimorphin family signature. | 209 | 248 | IPR006012 | GO:0005484|GO:0006886|GO:0016020 | |
| Car13g00552 | 303 | SUPERFAMILY | t-snare proteins | 32 | 258 | IPR010989 | GO:0016020|GO:0016192 | |
| Car13g00552 | 303 | ProSiteProfiles | t-SNARE coiled-coil homology domain profile. | 203 | 265 | IPR000727 | - |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Car03g00212 | Car-Chr3:3439074 | Car13g00552 | Car-Chr13:7435500 | 8.80E-97 | dispersed | |
| Car03g00676 | Car-Chr3:6006696 | Car13g00552 | Car-Chr13:7435500 | 1.40E-63 | dispersed | |
| Car06g00468 | Car-Chr6:2592637 | Car13g00552 | Car-Chr13:7435500 | 1.44E-125 | dispersed | |
| Car07g00809 | Car-Chr7:4283931 | Car13g00552 | Car-Chr13:7435500 | 1.68E-112 | dispersed | |
| Car07g01140 | Car-Chr7:6851525 | Car13g00552 | Car-Chr13:7435500 | 1.56E-101 | dispersed | |
| Car13g00552 | Car-Chr13:7435500 | Car14g00335 | Car-Chr14:1634408 | 4.65E-107 | dispersed | |
| Car17g01008 | Car-Chr17:8021846 | Car13g00552 | Car-Chr13:7435500 | 3.90E-06 | dispersed | |
| Car20g00525 | Car-Chr20:2892265 | Car13g00552 | Car-Chr13:7435500 | 9.53E-29 | dispersed | |
| Car14g00978 | Car-Chr14:7045782 | Car13g00552 | Car-Chr13:7435500 | 1.19E-99 | transposed | |
| Car13g00552 | Car-Chr13:7435500 | Car18g00320 | Car-Chr18:1958807 | 0 | wgd |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Car13g00552 | K08486 | - | csv:101217140 | 516.924 |