Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car13g00556 ATGCCAACGTACGCTTTCTATGACAGAGTTTCCAGACTTTTCCGGGACCATCCGTCGTTTTCCAGGCTCCTTGTTCTTGTCTCCGTTAGTGGGGGGAGCCTTGTAGCATATGCTGATGCTAGCCCAACGAATGGGGTACCCAGTATTGCATCTAAAGCCAATGTAGATGAGAAAAAGAAGAAGGTGGTAGTGCTTGGAACTGGTTGGGCGGGAACAAGTTTCTTGAAGAATATTAAAGATCCGTCGTATGAGGTTCAAGTGATATCACCTCGAAATTATTTTGCGTTCACCCCATTATTACCAAGTGTTACATGTGGTACAGTGGAAGCCCGTAGCATTGTTGAACCCATTCGCAACATTGTGAGAAAGAAAAGGGTAGACATTAGATTCAATGAAGCAGAATGCTACAAGATTGATGCTAAAAACAAAAAACTCTACTGCCGATCTAACGAAAACAACAATCTGAATGGAAAAAAGGAATTTGTTGTGGATTACGACTACCTGGTGATATCTGTGGGAGCACAAGTTAATACATTCAATACTCCTGGCGTTGTGGAGAATTGCCATTTCTTAAAGGAAGTGGAAGATGCTCAGAGAATACGAAGAACTGTAATTGATTGCTTTGAGAGGGCAAGCCTGCCTACCCTGGATGAAGAAGATAGAAAGAAAATTCTTCATTTTGCTATTGTTGGTGGTGGCCCCACTGGTGTGGAATTTGCAGCAGAACTTCATGATTTTGTTAATGAGGACTTGGTCAAGTTATATCCTGGACTTCAGGATTTTGTAAAAATTACTCTTCTTGAGGCAGGAGATCATATCTTGAACATGTTTGACAAAAGAATTACTGCTTTTGCTGAAGAAAAATTCCGTAGAGATGGTATTGATGTTAAGACAGGATCGATGGTAATCAAGGTAACTGATAAAGAGATTTCTACCAAGGAAATGAAGAATGGAGAAATATCCTCTATGCCTTATGGAATGACTGTATGGTCAACTGGAATAGGAACGCGTCCGATCATAAAGGACTTTATGACACAGATTGGTCAGGCTAACAGGCGTGCTTTGGCAACCGACGAATGGCTTCGAGTAGAGGGATGCGACAATGTATATGCACTTGGTGACTGCGCTACTATAAATCAGCGAAGAGTCATGGAGGATATTTCAGCAATTTTTATCAAGGCAGACAAAGACAATTCTGGGACACTAACAGTTAAAGAATTTAAAGAAGTCATTGATGACATATGTGAAAGGTATCCCCAGGTGGAACTATATTTGAAGAATAAGCAAATGCACGACATTGTTGATCTTTTAAAAGGATCCAAAGGGGATGTGGCAAAGGAATCAATCGCACTAGACATTGAAGAGTTTAAATCCGCCCTTTCCCAAGTTGATTCACAAATGAAAAACCTTCCTGCTACCGCACAGGTGGCTGCACAACAAGGCGCATATCTTGCCCATTGTTTTAACCGTATGGAAGAATGCGAAAGCAATCCTGAAGGTCCTCTGAGGTTTAGGGGATCAGGACGCCACCGCTTTCGGCCCTTTAGGTACAAACATCTTGGACAATTTGCACCATTAGGAGGAGAACAAACGGCTGCACAACTTCCTGGAGATTGGGTGTCCATTGGCCACAGCTCTCAGTGGCTCTGGTATTCTGTCTATGCAAGCAAGCAAGTTAGTTGGCGGACAAGAGCACTAGTGGTAACGGATTGGACAAGGCGTTTTGTTTTTGGAAGAGATTCGAGTCGCATATGA 1755 42.45 MPTYAFYDRVSRLFRDHPSFSRLLVLVSVSGGSLVAYADASPTNGVPSIASKANVDEKKKKVVVLGTGWAGTSFLKNIKDPSYEVQVISPRNYFAFTPLLPSVTCGTVEARSIVEPIRNIVRKKRVDIRFNEAECYKIDAKNKKLYCRSNENNNLNGKKEFVVDYDYLVISVGAQVNTFNTPGVVENCHFLKEVEDAQRIRRTVIDCFERASLPTLDEEDRKKILHFAIVGGGPTGVEFAAELHDFVNEDLVKLYPGLQDFVKITLLEAGDHILNMFDKRITAFAEEKFRRDGIDVKTGSMVIKVTDKEISTKEMKNGEISSMPYGMTVWSTGIGTRPIIKDFMTQIGQANRRALATDEWLRVEGCDNVYALGDCATINQRRVMEDISAIFIKADKDNSGTLTVKEFKEVIDDICERYPQVELYLKNKQMHDIVDLLKGSKGDVAKESIALDIEEFKSALSQVDSQMKNLPATAQVAAQQGAYLAHCFNRMEECESNPEGPLRFRGSGRHRFRPFRYKHLGQFAPLGGEQTAAQLPGDWVSIGHSSQWLWYSVYASKQVSWRTRALVVTDWTRRFVFGRDSSRI 584
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 7452810 7458174 + Carg21470-RA Car13g00556 159473
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car13g00556 584 ProSitePatterns EF-hand calcium-binding domain. 395 407 IPR018247 -
Car13g00556 584 ProSiteProfiles EF-hand calcium-binding domain profile. 382 417 IPR002048 GO:0005509
Car13g00556 584 Pfam Pyridine nucleotide-disulphide oxidoreductase 60 385 IPR023753 GO:0016491
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car13g00556 Car-Chr13:7452810 Car20g00299 Car-Chr20:1732255 6.43E-14 dispersed
Car13g00556 Car-Chr13:7452810 Car19g00757 Car-Chr19:8389832 0 wgd
Car13g00556 Car-Chr13:7452810 Car02g00106 Car-Chr2:670617 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car13g00556 K03885 - csv:101204145 1122.84