Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Car13g00565 | ATGACAGGAAGGGAAAGGGAGAGACCACCGAGTTTCTCTGGTAACTTTGGGGACCCACCAAGTACGAAGGAATTTGATGAAAGTAGAACAAGCTCAGATTTGCCTGTGTTTGACTTGGTCACTATAGCTAAGGCAACCGACAATTTTTGTTTTAATAACAAGCTTGGAGAAGGTGGCTTTGGGGCTGTTTATAAGGGAAAGCTTACAAATGGAGAGGAAATTGCAGTTAAAAGGCTAGCTAAGAATTCAGGGCAAGGAGTTGGAGAGTTCAAGAATGAAGTTACTTTAATTGCAAAGCTCCAACATAGAAACCTGGTCAGAATTTTAGGGTATTGCGTTAAGAATGAAGAGAAAATGCTTGTGTATGAATACTTGCCAAACAAAAGCTTGGACTCTTTCATCTTTGATGAAAGCAAGAGGGCTTTGCTTAATTGGAGAAAACGCTTTGAAATCATTTGCGGTGTCGCTCGAGGGATGCTATATCTTCATCAAGATTCGAGATTAAAAATCATTCATCGAGATTTGAAGGCAAGCAATATACTGTTAGATGCTGAGTTGAATCCCAAAATTGCGGATTTTGGTATGGCAAGAATATTTGGTCAAGATCAAATTCAAGCAAACACAAATCGAATTGTCGGAACTGGTTATATGTCACCTGAATACGCAATGGAAGGTTTGTTCTCAGTGAAATCAGATGTATATAGCTTTGGAGTTTTGGTGTTGGAGATGATTACTGGGAAAAAGAACACCAACTACGATTCCTCGTACTTAAACTTGGTCGGACATGTTTGGGAGCTGTGGAAATTGGAGAAGGCAATGGAATTGGTAGACCCAAGTTTGGAAGAATCAAGCAGTGGATATGAAGTGATGAGATGCCTTCAAATTGGGCTGTTATGTGTGCAGGAGGATCCGACAGATCGTCCGACCATGTCGAGTGTGGTGTTCATGTTGGGCAACGAAGTGGGTGTTCCTTCTCCAAAGAAACCTGCTTTTATTTTGAAGAGGAAATACAACAGTGGAGATCCATCCACCAGTACTGAAGGAGCCAACTCTGTAAATGACCTAACAATTTCCATAATCAATGCTCGTTAA | 1092 | 40.84 | MTGRERERPPSFSGNFGDPPSTKEFDESRTSSDLPVFDLVTIAKATDNFCFNNKLGEGGFGAVYKGKLTNGEEIAVKRLAKNSGQGVGEFKNEVTLIAKLQHRNLVRILGYCVKNEEKMLVYEYLPNKSLDSFIFDESKRALLNWRKRFEIICGVARGMLYLHQDSRLKIIHRDLKASNILLDAELNPKIADFGMARIFGQDQIQANTNRIVGTGYMSPEYAMEGLFSVKSDVYSFGVLVLEMITGKKNTNYDSSYLNLVGHVWELWKLEKAMELVDPSLEESSSGYEVMRCLQIGLLCVQEDPTDRPTMSSVVFMLGNEVGVPSPKKPAFILKRKYNSGDPSTSTEGANSVNDLTISIINAR | 363 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 13 | 7526520 | 7528088 | + | Carg21461-RA | Car13g00565 | 159482 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Car13g00565 | 363 | ProSitePatterns | Protein kinases ATP-binding region signature. | 55 | 77 | IPR017441 | GO:0005524 | |
| Car13g00565 | 363 | Pfam | Domain of unknown function (DUF3403) | 323 | 363 | IPR021820 | GO:0004674 | |
| Car13g00565 | 363 | ProSiteProfiles | Protein kinase domain profile. | 49 | 331 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
| Car13g00565 | 363 | ProSitePatterns | Serine/Threonine protein kinases active-site signature. | 170 | 182 | IPR008271 | GO:0004672|GO:0006468 | |
| Car13g00565 | 363 | Pfam | Protein tyrosine and serine/threonine kinase | 51 | 315 | IPR001245 | GO:0004672|GO:0006468 | |
| Car13g00565 | 363 | MobiDBLite | consensus disorder prediction | 1 | 29 | - | - |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Car13g00565 | Car-Chr13:7526520 | Car16g00582 | Car-Chr16:3649898 | 2.37E-139 | dispersed | |
| Car13g00565 | Car-Chr13:7526520 | Car13g00573 | Car-Chr13:7595403 | 7.57E-110 | proximal | |
| Car13g00565 | Car-Chr13:7526520 | Car18g00312 | Car-Chr18:1872334 | 4.65E-107 | wgd |
Transcription factors information
| Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
|---|---|---|---|---|---|---|---|
| 89277 | PF07714 | PK_Tyr_Ser-Thr | 1.00E-51 | CL0016 | Car | PK |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Car13g00565 | - | - | cmos:111434312 | 702.59 |