Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car13g00584 ATGTTGGGAGGGCATGATTATGAAGAACATCATCATCACGAGGAGGACGTTGTTCTCCTGGAGATGACCCAGAAAACCTTCGAAACGGAGCTGGAGAAGTTTGGGGAAGAGGATCAGTTGGAGAGCAGCAGCAGATCGGTGAAGGACGCCGCCATGGGAGAGGACGACCCATTTCTTCACAATCACACTAATAAGAGGAAGCGTTACCATCGCCATACTCAGCTTCAAATCCAGGAAATGGAAGCGTTCTTTAAGGAATGTCCTCACCCAGATGACAAGCAAAGAAAAGAGCTGAGCCGTGAGCTAGGGCTGGATCCCCTCCAAGTCAAGTTCTGGTTTCAAAACAAGCGTACCCAACTCAAGGCTCAACATGAACGCCATGAGAATGCAATCTTGAAGGCTCAAAACGAGAAACTACGAGCAGAGAACATGCGGTACAAGGAAGCTCTAAGCAACACCAGCTGCCCCAATTGCGGCGGCCCTGCCGCTCTCGGCGAGATCAAGTTTGCTGGGAAGCCATGGGCTTCCCATTCTCGCATCCCGCCCTGCGCCCTTGATCTTGGGGTTGGCAGAGCATTGCAGCCGCCCCAAGCAGAGTTCTTAGGGGAAATCTATGGAGTTGGAGACATGTTGAAGTCTGTCACTACTGAAATTGATAAGCCAGTGATCGTTGAGCTTGCTGTTTCAGCCATGGAAGAGCTTTGCAGAATGGCTCACGCAGGCATAAAATTCAATTTTTTAAAGTCACGACGTATATTTCAGAATCAGTGGTCAAACATATTTTGCGGGATTGTTTCGAGAGCATTGACCCTCGAAGTCTTGTCAACGGGAGTCGGTGGCAGCTATAATGGAGCTCTCCACGTCATGACGGCGGAGTTTCAAGTTCCTTCTCCTTTAGTTCCGACTCGAGAAAATTACTTTGTGAGATATTGTAAGCAGCAGACAGATCGGAGTTGGGCTGTGGTCGATGTCTCGCTAGACTATTTACGTCCCACTCCAACATCAAGGACTCGAAGAAGACCGTCGGGTTGCTTAATCCAAGAACTTCCGAATGGTTACTCAAAGATTATGTGGGTGGAACATGTTGAAGTGGATGATCGAGCGGTACACAATTTGTACAAACGAGTGGTCACTTGTGGGCTTGCCTTCGGCGCCAAACGATGGGTCGCTACGCTTGATCGACAGTGCCAACGCCTGACCAACTCCTCTGCTGCCAATATTCCTGCAGTGGACATATGCGTGGTAACCGGGCAAGAGGGGAGGAGGAGCGTAATGAAGCTAGCAGAGAGAATGGTTAGGAGCTTCTGCAGTGGCGTTGGAGCTGCTTCTGCACACAATTGGACAACATTATCCACAATTGATTCCGACCATGTTCGAGTCATGGCAAGAAAGAGTCTCGACGATCCGGGCCGACCTCCTGGAATTGTTCTAAATGCAGCAACTTCATTCTGGATTCCAATTCCCCCTAATAGGGTCTTCCATTTTCTTCGAGATCAAAACACTCGCAGTCAATGGGATGTTCTTTCAAATGGTGGGTTGGTCCAAGAAATGGCTCGCATTGGCAATGATCGCAACCCGGGGAACTGTGTGTCGTTGCTTCGTGTTAACAGTACAAATTCAAGCCAGAGCAACATGCTGATACTACAAGAGAGTTGCAGCGACATTAGTGGTTGCTACATAACCTATGCACCAGTCGACACCGTCGCTATGAACATGGTGTTGAGCGGCGGAGACCCTGATTACGTTGCTCTGTTGCCGTCTGGATTCGCCATACTGCCTGATGGACCTAGTGGCCCCGATGCGCCAGCGGGAATTCTGGAGTTCGGGTCCGGTGGCTCCTTGTTGACAGTTGCATTTCAGATATTGGTGGATTCAGTGCCAACGGCCAAACTGTCTCTAGGGTCGGTGGCGACGGTGAACAGCCTCATCAAGTGCACGGTCGAGCGGATTAGAGCTGCGGTCATGTGTGAACATCCATGA 1980 50.1 MLGGHDYEEHHHHEEDVVLLEMTQKTFETELEKFGEEDQLESSSRSVKDAAMGEDDPFLHNHTNKRKRYHRHTQLQIQEMEAFFKECPHPDDKQRKELSRELGLDPLQVKFWFQNKRTQLKAQHERHENAILKAQNEKLRAENMRYKEALSNTSCPNCGGPAALGEIKFAGKPWASHSRIPPCALDLGVGRALQPPQAEFLGEIYGVGDMLKSVTTEIDKPVIVELAVSAMEELCRMAHAGIKFNFLKSRRIFQNQWSNIFCGIVSRALTLEVLSTGVGGSYNGALHVMTAEFQVPSPLVPTRENYFVRYCKQQTDRSWAVVDVSLDYLRPTPTSRTRRRPSGCLIQELPNGYSKIMWVEHVEVDDRAVHNLYKRVVTCGLAFGAKRWVATLDRQCQRLTNSSAANIPAVDICVVTGQEGRRSVMKLAERMVRSFCSGVGAASAHNWTTLSTIDSDHVRVMARKSLDDPGRPPGIVLNAATSFWIPIPPNRVFHFLRDQNTRSQWDVLSNGGLVQEMARIGNDRNPGNCVSLLRVNSTNSSQSNMLILQESCSDISGCYITYAPVDTVAMNMVLSGGDPDYVALLPSGFAILPDGPSGPDAPAGILEFGSGGSLLTVAFQILVDSVPTAKLSLGSVATVNSLIKCTVERIRAAVMCEHP 659
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 7664985 7669682 + Carg07532-RA Car13g00584 159501
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car13g00584 659 ProSiteProfiles 'Homeobox' domain profile. 63 123 IPR001356 GO:0003677
Car13g00584 659 Pfam START domain 236 398 IPR002913 GO:0008289
Car13g00584 659 ProSiteProfiles START domain profile. 251 401 IPR002913 GO:0008289
Car13g00584 659 Coils Coil 117 152 - -
Car13g00584 659 MobiDBLite consensus disorder prediction 32 61 - -
Car13g00584 659 ProSitePatterns 'Homeobox' domain signature. 98 121 IPR017970 GO:0000981|GO:0006355
Car13g00584 659 Pfam Homeodomain 66 121 IPR001356 GO:0003677
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car13g00584 Car-Chr13:7664985 Car20g00526 Car-Chr20:2899070 0 dispersed
Car11g01520 Car-Chr11:12241544 Car13g00584 Car-Chr13:7664985 0 wgd
Car13g00584 Car-Chr13:7664985 Car19g00719 Car-Chr19:8221874 0 wgd
Car13g00584 Car-Chr13:7664985 Car02g00137 Car-Chr2:798512 0 wgd
Car13g00584 Car-Chr13:7664985 Car03g00472 Car-Chr3:5043138 0 wgd
Car13g00584 Car-Chr13:7664985 Car07g00253 Car-Chr7:1378530 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
4544 PF01852 START 7.60E-39 CL0209 Car TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car13g00584 K09338 - csv:101212604 1023.08