Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car13g00599 ATGTCTTGTTCAAATCTCACCATGTTGGTGTCCTCAAAATCCGCCGTCTCTGATGCCTCCTCCCTTTCATTCCGATCAGTTCTAAGCCCTTTTAAGCTCCCTTCCCACAACTCAACCTCAACCTACCCTACCCGATCATGGTCAGTTACCCCAATTCATTGCGGTCTTCGGGATCTCCGAGACCGTATCGATTCAGTGAAGAACACCCAGAAGATCACTGAAGCTATGAAGCTTGTCGCCGCTGCCAAAGTCCGCAGAGCTCAAGAAGCTGTCGTTAATGGAAGACCCTTCTCAGAAGCCTTGGTTGAGGTCCTTTACAACATCAATGAGCAACTTCAAACAGAAGACGTAGATGTTCCTTTAACCAAAGTAAGACCAGTCAAGAAAGTTGCATTAGTTGTTGTCACCGGCGACAGAGGTCTTTGCGGCGGTTTCAACAACGCCATCATTAAGAAAGCTGAAGCCAGAATCTCGGAATTGAAGGAATTGGGTCTTGAGTACACTGTCATCAGCGTTGGCAAAAAGGGTAACTCCTACTTCCTCCGTCGGCCTTACATTCCGGTCGATAAGTTCCTCGAAGGCGGCACGCTTCCGACAGCCAAAGAAGCTCAAGCCATTGCTGATGATGTCTTCTCCCTCTTCATCAGTGAGGAGGTTGACAAAGTAGAGCTTTTGTACACCAAATTCGTGTCATTGGTGAAATCCGACCCTGTTATTCACACCCTTCTTCCGCTCTCGCCCAAGGGCGAGATCTGCGACATAAACGGTGTCTGTGTCGACGCCGCCGAAGATGAATTTTTCAGGTTGACAACAAAGGAAGGGAAGCTGACAGTGGAGAGGGATACGGTGAGGACAAGCACCTCAGATTTCTCCCCAATTTTGGAGTTTGAGCAAGACCCAGTTCAGATCTTGGATGCTTTATTGCCTCTGTATTTAAACAGCCAGATTTTGAGGTCACTGCAGGAGTCTCTGGCCAGTGAGCTCGCTGCTAGAATGAGCGCCATGAGCAGTGCCAGTGACAATGCTTCTGAGCTGAAGAGGACTCTGTCGATTGTGTACAACAGACAGCGCCAAGCTAAGATCACTGGAGAAATATTGGAGATTGTTGCTGGTGCTAATGCCTTGACATGA 1131 48.45 MSCSNLTMLVSSKSAVSDASSLSFRSVLSPFKLPSHNSTSTYPTRSWSVTPIHCGLRDLRDRIDSVKNTQKITEAMKLVAAAKVRRAQEAVVNGRPFSEALVEVLYNINEQLQTEDVDVPLTKVRPVKKVALVVVTGDRGLCGGFNNAIIKKAEARISELKELGLEYTVISVGKKGNSYFLRRPYIPVDKFLEGGTLPTAKEAQAIADDVFSLFISEEVDKVELLYTKFVSLVKSDPVIHTLLPLSPKGEICDINGVCVDAAEDEFFRLTTKEGKLTVERDTVRTSTSDFSPILEFEQDPVQILDALLPLYLNSQILRSLQESLASELAARMSAMSSASDNASELKRTLSIVYNRQRQAKITGEILEIVAGANALT 376
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 7758256 7759386 + Carg07547-RA Car13g00599 159516
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car13g00599 376 Gene3D ATP synthase, gamma subunit, helix hairpin domain 55 122 - -
Car13g00599 376 Gene3D - 123 246 - -
Car13g00599 376 CDD F1-ATPase_gamma 56 372 IPR000131 GO:0015986|GO:0045261|GO:0046933
Car13g00599 376 SUPERFAMILY ATP synthase (F1-ATPase), gamma subunit 55 375 IPR035968 GO:0015986|GO:0045261|GO:0046933
Car13g00599 376 Pfam ATP synthase 56 375 IPR000131 GO:0015986|GO:0045261|GO:0046933
Car13g00599 376 PANTHER ATP SYNTHASE GAMMA CHAIN 1, CHLOROPLASTIC 1 375 - -
Car13g00599 376 PANTHER ATP SYNTHASE GAMMA CHAIN 1 375 IPR000131 GO:0015986|GO:0045261|GO:0046933
Car13g00599 376 ProSitePatterns ATP synthase gamma subunit signature. 361 374 IPR023632 -
Car13g00599 376 PRINTS ATP synthase gamma subunit signature 127 146 IPR000131 GO:0015986|GO:0045261|GO:0046933
Car13g00599 376 PRINTS ATP synthase gamma subunit signature 220 237 IPR000131 GO:0015986|GO:0045261|GO:0046933
Car13g00599 376 PRINTS ATP synthase gamma subunit signature 322 341 IPR000131 GO:0015986|GO:0045261|GO:0046933
Car13g00599 376 PRINTS ATP synthase gamma subunit signature 353 374 IPR000131 GO:0015986|GO:0045261|GO:0046933
Car13g00599 376 Hamap ATP synthase gamma chain [atpG]. 53 375 IPR000131 GO:0015986|GO:0045261|GO:0046933
Car13g00599 376 Gene3D ATP synthase, gamma subunit, helix hairpin domain 271 375 - -
Car13g00599 376 TIGRFAM ATPsyn_F1gamma: ATP synthase F1, gamma subunit 55 375 IPR000131 GO:0015986|GO:0045261|GO:0046933
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car09g00794 Car-Chr9:4741420 Car13g00599 Car-Chr13:7758256 5.37E-140 transposed
Car13g00913 Car-Chr13:9427283 Car13g00599 Car-Chr13:7758256 3.70E-28 transposed
Car13g00599 Car-Chr13:7758256 Car18g00282 Car-Chr18:1655228 2.75E-39 wgd
Car13g00599 Car-Chr13:7758256 Car03g00485 Car-Chr3:5080403 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car13g00599 K02115 - csv:101214408 632.484