Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car13g00617 ATGGCACCGCCAACAGTCGTTCTCTCTCTCCTCTCCCTCTTTTTCCTCTCCGTCTCTCTCTCCGCCGCTATCTCCGCCTCCCCTGCCGCCGTACCTAACCCGGAAATCGTTGTAGAAGAAGTACACAGATCCATAATCAATTCGACGAAGAGGAGAAATTTGGGGTATCTCTCATGTGGGACCGGAAATCCCATCGACGATTGCTGGCGGTGCGACCCGAATTGGGAGAAAAATCGACAGAGACTAGCTGACTGTGGAATCGGCTTTGGAAAAAACGCCATCGGCGGTCGTGACGGCCGAATCTACGTCGTCACCGACGCCGGCGACGATGACCCTGTCAACCCCAAACCAGGAACTCTCCGTTACGCCGTAATCCAAGACGAACCCCTCTGGATCATCTTCGCTCGCGACATGGTCATTCGATTAAAAGAGGAACTAATCATGAACTCCTTCAAAACCATCGACGGCCGTGGTGCGAGCGTCCACATCGCCGGCGGCCCCTGCATTACGATTCAATACGTAACAAACATCATAATCCACGGTCTCAACATTCACGACTGTAAACCAGGGGGAAACACCGACGTTCGAGATTCCCCTCGGCATTTCGGATTCAGAACCATATCGGACGGCGACGGCGTTTCAATCTTCGGTGGTAGCCATGTTTGGGTCGATCATTGCTCTTTATCAAACTGTAACGATGGTTTAATCGACGCGATTCATGGGTCCACAGCCATCACGATTTCAAACAATTACATGACGCATCACGATAAAGTGATGCTATTAGGCCACAGCGATTCGTACACACAAGACAAGAATATGCAAGTCACCATAGCTTTCAACCACTTCGGCGAAGGGCTTGTTCAAAGAATGCCCAGATGCCGACATGGGTACTTCCATGTAGTGAACAATGACTACACGCATTGGGAAATGTACGCCATCGGAGGTAGCGCCGCGCCGACCATCAACAGTCAGGGGAACAGATTCGTTGCACCAAATGACAGATTCAGCAAAGAAGTGACGAAATACGAGGATGCACCGGAGAGTGAATGGAAGAATTGGAACTGGCGGTCGGTTGGGGATCTGATGGTAAACGGTGCGTTTTTCACAGCCTCCGGCGCCGAATCGTCGTCCAGCTACGCCAGAGCGTCGAGCTTAGGGGCGCGGCCGTCGTCTCTTGTTGGAACAATCACGACGAATGCGGGTGCACTGAGCTGCAGAAAGGGCTCCCGCTGCTGA 1236 52.43 MAPPTVVLSLLSLFFLSVSLSAAISASPAAVPNPEIVVEEVHRSIINSTKRRNLGYLSCGTGNPIDDCWRCDPNWEKNRQRLADCGIGFGKNAIGGRDGRIYVVTDAGDDDPVNPKPGTLRYAVIQDEPLWIIFARDMVIRLKEELIMNSFKTIDGRGASVHIAGGPCITIQYVTNIIIHGLNIHDCKPGGNTDVRDSPRHFGFRTISDGDGVSIFGGSHVWVDHCSLSNCNDGLIDAIHGSTAITISNNYMTHHDKVMLLGHSDSYTQDKNMQVTIAFNHFGEGLVQRMPRCRHGYFHVVNNDYTHWEMYAIGGSAAPTINSQGNRFVAPNDRFSKEVTKYEDAPESEWKNWNWRSVGDLMVNGAFFTASGAESSSSYARASSLGARPSSLVGTITTNAGALSCRKGSRC 411
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 7884129 7885674 - Carg07565-RA Car13g00617 159534
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car13g00617 411 Pfam Pectate lyase 147 328 IPR002022 -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Car13g00617 Car18g00298 CST
Car13g00617 Car18g00198 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car02g01451 Car-Chr2:9460031 Car13g00617 Car-Chr13:7884129 0 dispersed
Car03g00499 Car-Chr3:5130987 Car13g00617 Car-Chr13:7884129 9.62E-147 dispersed
Car04g02565 Car-Chr4:20223443 Car13g00617 Car-Chr13:7884129 0 dispersed
Car06g01087 Car-Chr6:8171712 Car13g00617 Car-Chr13:7884129 0 dispersed
Car12g00040 Car-Chr12:186828 Car13g00617 Car-Chr13:7884129 0 dispersed
Car13g00617 Car-Chr13:7884129 Car14g01674 Car-Chr14:13329725 0 dispersed
Car13g00610 Car-Chr13:7838479 Car13g00617 Car-Chr13:7884129 2.43E-145 proximal
Car13g00617 Car-Chr13:7884129 Car18g00198 Car-Chr18:1127035 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car13g00617 K01728 - csv:101209736 768.459