Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car13g00618 ATGGAGGAAGTCGATGAGAAACGATGTATCAAAATTCTGCCGCCAAAACTCGTTCTCCAGAAAAAAGAGCCGGCTCTTCAATGGCTCATCGGATCGCCGTTTCTGTCGCCTTTGACTATCGTCTCCACTCTCAGATGCATCCATCATTTGTCTCCACAGGAATCTGTCTCGCCTGATTTCACCAAGGAAGCAGAAGACCTGAGGACGTTATTATTGAAGGGTTTTTATATTATTGGAGCATTGGTTGTTGGAAATTTCAACGTCGAAGAACATGCGAGAAAGGCAATTGATTTGGCGAGGAGACTGAATCAGCTTCTATCTCATGGAGAAAAGTCGGAGAAACAGTTATTGATTGGAGCAGTTGCTGATTTCAATTCCACAGATATCCACTTTTTTGTCTCCGATTCTGGAAATGGCACGAGCTTGGATTCTGTCTCTTCTGTTATGTACGAAAATAATCCTGAAAAATATATTTGGGAGAGAGGTTGTCTGCTCCGGTGCGAACTACCGATTAGTGTACCGCTCTATATTCCTCTCGACAGTCCATCAGATGTTGAAAAGACGTACACACATGCCATAGAATCAGTTGTTTCCAAGTTGAGTGACCCACAGGTGGTATATGCAGTGGAATCGTTATATAAAAACTCCACAGAAGATCCTTGTCCAGTCATTCTACGTGGTTCACAAATGGATTTCCAAATTAATCTCTCAAAGATTAGGCATTTGAATGAAGGCAGCCAAAATGCTGATGGGATGTCTTTTCCATGTGAACACTTCTGTTTAAAAAGTAAAACTGAGTCCACAACGTTTTGTTCGCAGAATGCAGATATAGTCCAAGTAAGTGTTCTTCTAAATAGCTCGGGAAAGTCTCAAAAATCTAATGCACCAGTTGTAGAATACTTGCCAGCTATGGACAAGGCCAGGCTTTTGGTTGTCGACTTGAAGGTAGAAGTGCTCTGTTATGCTGCCAAGTATCTTCCATTGACTTATGCTGTTTCAATGTTGGTCATTCCGGGTGTAGTTGATCAGTTAAACTCAATGAAGAATGCAATATTTCCCAACCTTTTAAAGCAACTCCCTCAGCTAGTGCCATATCATTTTTGTCCTCCCGGATTTTTGCATCCAATAACTGCTACCTATGAACTCACTTATGGGGAGACTGAAATGAAGCAAGTTGAATTAAGGAAAGCCCTACACCTAAGACTGGGGTTACCTTTTGATCGTCCTGTACTAAGAATTGCCAGTGCCTTGGATTTCTCTAGTAGGAAGGACAATTTGCCACGAAAGGGTTCCTTTTTGCTCAAAGATGTTCATATTGGAATTCCTAGTAGCGGTGTTTCTGGTGGCCAAACGTCTATTGTTCAAGGGTCGTATGAGTACCATCATTATCTTCAAGAAGGTTTCAATGACTCGGGCTGGGGTTGTGCTTACCGCTCTTTGCAAACCATCATTTCCTGGTTCAGACTCCAACATTATACATCCATAGATGTTCCTTCTCATAGTTCTACCCCTTTTAGGGAAATACAAGAAGCACTAGTGGAGATCGGTGACAAGGATGATTCATTTATTGGGTCACGCGAATGGATAGGCGCTATCGAATTGAGCTTTGTTTTAGACAAATTGCTTGGTGTGAGTTGCAAAATCATAAATGTCAGATCCGGGGCTGAACTTCCCGAAAAATGTAGAGAATTAGCTGCACACTTCGAGAATCAAGGAACTCCAATTATGATTGGAGGCGGTGTTCTTGCATACACGCTCTTGGGAGTTGATTACAACGAAGCAAGTGGTGATTGTGGGTTCTTAATTCTGGATCCTCACTACACGGGGAGTGATGACATCAAGAAAATTGTGAGTGGGGGTTGGTGTGGATGGAAGAAAGCCGTTGATAGCAAAGGGAAGAACTTCTTCTTACACGATAAGTTCTATAATCTTCTGCTGCCTCAGAGGCCAAACATGGTTTAG 1962 42.35 MEEVDEKRCIKILPPKLVLQKKEPALQWLIGSPFLSPLTIVSTLRCIHHLSPQESVSPDFTKEAEDLRTLLLKGFYIIGALVVGNFNVEEHARKAIDLARRLNQLLSHGEKSEKQLLIGAVADFNSTDIHFFVSDSGNGTSLDSVSSVMYENNPEKYIWERGCLLRCELPISVPLYIPLDSPSDVEKTYTHAIESVVSKLSDPQVVYAVESLYKNSTEDPCPVILRGSQMDFQINLSKIRHLNEGSQNADGMSFPCEHFCLKSKTESTTFCSQNADIVQVSVLLNSSGKSQKSNAPVVEYLPAMDKARLLVVDLKVEVLCYAAKYLPLTYAVSMLVIPGVVDQLNSMKNAIFPNLLKQLPQLVPYHFCPPGFLHPITATYELTYGETEMKQVELRKALHLRLGLPFDRPVLRIASALDFSSRKDNLPRKGSFLLKDVHIGIPSSGVSGGQTSIVQGSYEYHHYLQEGFNDSGWGCAYRSLQTIISWFRLQHYTSIDVPSHSSTPFREIQEALVEIGDKDDSFIGSREWIGAIELSFVLDKLLGVSCKIINVRSGAELPEKCRELAAHFENQGTPIMIGGGVLAYTLLGVDYNEASGDCGFLILDPHYTGSDDIKKIVSGGWCGWKKAVDSKGKNFFLHDKFYNLLLPQRPNMV 653
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 7890191 7895636 + Carg07566-RA Car13g00618 159535

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Car13g00618 653 Pfam Peptidase family C78 450 645 IPR012462 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car13g00618 K01376 UFSP2; Ufm1-specific protease 2 [EC:3.4.22.-] - csv:101209572 1150.19
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g881 . Blo16g00244 . . . . Bma06g00239 . Cmo13g00800 . . . . . . Cpe20g00338 . . . . . . . . . . . . . . . . Cone16ag0055 . . Lsi02g00285 Csa01g00757 Chy12g01210 Cme12g01632 . . Bda11g01629 . . . . . Sed01g1812 . . Cma13g00771 . Car13g00618 . . . Bhi08g01369 Tan05g2119 Cmetu12g0770 Lac10g0339 Hepe07g2309 . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003460 2 1 2 2 1 1 2 1 1 1 1 1 2 2 2 2 1 2 1 1 2 2 2 2 2 1 2 2 2 2 48
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Car13g00618 Car_Chr13 FPKM 0.837275 1.367606 0.621854 0.89663 0.881781 1.360264 0.925865 1.749203 1.727794 1.570319