Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car13g00624 ATGTTTATCGTTGTTTATACTCTAAACTGCAATTATATCTGTTTTCATGTATTGTGTGTATTTTGCTACTTTCCTCTAGGGTTTAACTGTGGGGAGGCAGCCAATATTGCAACTCCAGAATGGGTAAGGCTTGCTAAAGATGCTGCAATTCGTAGAGCTTCGATCAATTATCCTCCGATGGTCTCTCATTTTCAGTTGCTATACGATCTTGCTTTAAGTTCCAGATCACCTCTGTGCACGGGTGCTGAACCAAGAAGTTCACGACTAAAAAATAAAAGAAAGAGTGAAGGGGAAGCAGTTATAAAAGAGTTATTTGTACAGAATATTGTAGAGAATAACAGCCTGCTGGACATTCTTGGAAGAGGAGTGTCGGTTGTACTTCTTCCCCCAGGTTCTTCAGATTCTATTTATTCGAGACAGCGCATTGGATCCCACCCGAGAGCAAAATCTAGATTTCCTGTTGGTTTTTGCAGTTCTAAGGAAGAAACCAAATCTTCTCAAAGTTTTGATTATGATAATCTCACACTAGAAAATAGCCAGGGAATGAATCAAGTTAAAGGTTTCTATTCAGCTAACAGGCTGTATTCTACTCTCTCTGAAAGAAACACGGAGAATTTATGTGATTCAAGATCGAAGACTTCGAATGGCAGCAACGAACGAGGTGGTAATGTTCTTAGTGATGGATTATCAGATCAAAGGCTGTTTTCTTGTGTCACATGTGGCATTTTAAGCTTTGCCTGTGTAGCCATCGTCCAACCCAGAGAACAAGCTGCTAGGTACCTTATGTCAGCTGACTGTAGCTTCTTTAATGATTGGGCTGTTGGTTCTGGGATTGCTATTAGAGATGGGCATGCAGTTAGCTCTCAGCAGATTAGTAATAGTGGAAAAAGAGATACGTGCGTTTCTGATGGTTTGTACGACGTCCCAGTCCAGGCTGTCAATCGCCAGCTTCCAATTGCAGATGGAAGTTACAAAGCTAATCTAAGTACTGAAAAACGGAATGAGACTTCTGCCCTTGGCATGCTCGCATTGGCATATGGACATTCTTCCGATTCTGAGGAGGACAATGCTGAAGCAGATGCTGCTTTAAATCCGGGCGATGCTAAACTAACGGTTTGTTCTTCAGGAAACCAATATCAGTATGACAATTCTGGTCTTACTTCTAGTGAAAATTGCAAAAATACTGCAACTTTGGATCACAATGCCTCGTCATTTGGCATTAACGCTACAGATCAAATGCACTTCCAAATCAATGACTATGAAGAATTTGGACAAGCTAGATGTTCTTCTGAGTCTGAAATGGATGGCATAGGTTCAACTAAGAAAAATGGCTTGTCGCCTAGATATCAAGATTTGCATGTGAACGACAGATCTTCCTTAGACGCTGATACTGAAAAACCAACGTTTGACGAATCCACGGAACCGGTGGAGATTGAGAATATGGCATTTGCTCCAGATATTGATGAAGACTCCTCTAGGTTGCATGTATTCTGCCTAGAGCACGCAAAAGAAGTGGAACAACAACTTCGACCAATTGGAGGAGCGCACATTCTTTTACTCTGTCATCCAGACTATCCGAAGATGGAGGCAGAAGCAAAATTGGTGGCACAAGAATTAAGTATGGACCATATGTGGACCGATACGACGTTCAGAGGTGCCACCGAAGATGAAGAAAGGAGAATTCAGTTAGCTTTAGATAGCGAGGAAGCGATTCCAGGTAATGGAGATTGGGCTGTAAAGTTGGGAATAAATCTGTTCTACAGTGCCAACCTTAGTCACTCTCCTCTTTATAGTAAGCAGATGCCATACAATTCTGTTATTTATAATGCATTTGGCCGTAGTGCTACTCCCAACGCTTCTGGTAAGCCGAAAGTCTATCAAAGAAGGACTGCTGGCAAGTTGAAGCGAATAGTTGCAGGGAAATGGTGTGGGAAAGTCTGGATGTCGAATCAAGTTCATCCTTTGCTAGCAAAGCAAGATCCTCAACAAGAAGATGTAGACGTCTTCCATTCTTGGACAATGCCGGATGAGAAGTTTGACAGGAAATCGGAAAATGTCCGTAAAAATGAGACTGTTATGGTGAATAGAAAATCCGCTGGCAAGAGAAAAATGACTCGTGGGAGCGGAACAGCTAAAAAAATGAAACCTCGAGAGTCAGAGGACATGGTTTCAGATGATTCAGTCGAAGATTGTGTCGATCAGCATCATAAGATTCATCGGAACAAGCGATACAAATTTGTTGAGATCAATGATGCTATGTCTGATGATTCTGTTGAGGATGATTCTTGTGGAAAACATGGAGGAGTTTCCATCAGCAAGGGAGTGACATATTGTCGAACGTATGACACCGGTTCAGAGGACTCTCTCGGAGATCGTCGTAATCAGCAGCACAGAGGGTTCTCTGGATTCAAGCTGCCGAAATGGGGTGAGATAGAACCTGCAGTTTCTGATGATTCCTTTGAGCACGATTCTTCTCGGCATCGTGAGCAACATATAAGGATTCCAAGAAGCAAGCAAACCAATGTTCTTAAAAAGAACGTCGTTTCACATGATATACGGGACGATAGTTTTCTTTGGCATCATCAAAGGACTTCCAGAAGCAAGAAGGCGAAATCAATCGAGAGTGAAGATGTCGTTTCAGAGGACTCTGTTGAAAATGATTCTCATCAGCATAGAAGTAGGCCTCAAAGGAAACCAGCCAAACCCACGTCGAGGGAAGACGTATTCTCAGACGATCCAGACGAAGATGATAATTCTCTTCTGCAGCATAGAAGAAACATGCAATTCAATACATCAGATAACCAACTTGATGATAGTGTTAATCAATACCGGAGGAGAGTACTCCGAAGTAAGCCAGTCAAGGCCGAGACAATTTCTCAAATAAAACAAGAGATCCTGCGATCTGCGAAGCGAGGAGCCTCGCAGACTTTGAAAGAAGAATTTGCTCAATCCTTAAAATGTGGAGGCCGCCATACCTCAAACTTAGAGACCCCTCAGCCAAGAATACAACATGCCACTAATCGGCACGGTAAGCAAGCTAAGAGGAATAGTAAATCGACCGATTTGGAATCAGAAAACGAGCAACCAGGTGGACCTAGCACACGTCTTCGAAAAAGAACTCTAAAGCCTACTAAACTTTCAGAAGCGAAACTAAAGGATAAAAAACCAATTAGCAAGAAAAAGGTGAAGAATAGTTCATCTTTGAAGACTCCAGCAGGCCGTAGAGATTCAAAAGCAGCAGGGGATGAGGAATCAGAATATCTTTGTGACATCGAGGGTTGCAATATGAGTTTCGGTTCAAAACAAGAACTCGTCGTGCACAAACGAAATGTTTGTCCTGTCAAAGGGTGTGGGAAGAAGTTCTTCTCACACAAGTACCTCGTGCAGCATCGTCGAGTCCACATGGACGACCGTCCCCTTAAATGTCCATGGAAGGGCTGCAAGATGACGTTCAAATGGGCATGGGCACGAACAGAACATATTCGTGTTCATACAGGTGCCCGACCTTACGTTTGTGCTGAACCAGGATGTGGTCAGACATTCAGATTCGTTTCGGATTTCAGTCGTCACAAGCGGAAGACTGGACATTCAACAAAGAAAGGTAGATGA 3609 42.81 MFIVVYTLNCNYICFHVLCVFCYFPLGFNCGEAANIATPEWVRLAKDAAIRRASINYPPMVSHFQLLYDLALSSRSPLCTGAEPRSSRLKNKRKSEGEAVIKELFVQNIVENNSLLDILGRGVSVVLLPPGSSDSIYSRQRIGSHPRAKSRFPVGFCSSKEETKSSQSFDYDNLTLENSQGMNQVKGFYSANRLYSTLSERNTENLCDSRSKTSNGSNERGGNVLSDGLSDQRLFSCVTCGILSFACVAIVQPREQAARYLMSADCSFFNDWAVGSGIAIRDGHAVSSQQISNSGKRDTCVSDGLYDVPVQAVNRQLPIADGSYKANLSTEKRNETSALGMLALAYGHSSDSEEDNAEADAALNPGDAKLTVCSSGNQYQYDNSGLTSSENCKNTATLDHNASSFGINATDQMHFQINDYEEFGQARCSSESEMDGIGSTKKNGLSPRYQDLHVNDRSSLDADTEKPTFDESTEPVEIENMAFAPDIDEDSSRLHVFCLEHAKEVEQQLRPIGGAHILLLCHPDYPKMEAEAKLVAQELSMDHMWTDTTFRGATEDEERRIQLALDSEEAIPGNGDWAVKLGINLFYSANLSHSPLYSKQMPYNSVIYNAFGRSATPNASGKPKVYQRRTAGKLKRIVAGKWCGKVWMSNQVHPLLAKQDPQQEDVDVFHSWTMPDEKFDRKSENVRKNETVMVNRKSAGKRKMTRGSGTAKKMKPRESEDMVSDDSVEDCVDQHHKIHRNKRYKFVEINDAMSDDSVEDDSCGKHGGVSISKGVTYCRTYDTGSEDSLGDRRNQQHRGFSGFKLPKWGEIEPAVSDDSFEHDSSRHREQHIRIPRSKQTNVLKKNVVSHDIRDDSFLWHHQRTSRSKKAKSIESEDVVSEDSVENDSHQHRSRPQRKPAKPTSREDVFSDDPDEDDNSLLQHRRNMQFNTSDNQLDDSVNQYRRRVLRSKPVKAETISQIKQEILRSAKRGASQTLKEEFAQSLKCGGRHTSNLETPQPRIQHATNRHGKQAKRNSKSTDLESENEQPGGPSTRLRKRTLKPTKLSEAKLKDKKPISKKKVKNSSSLKTPAGRRDSKAAGDEESEYLCDIEGCNMSFGSKQELVVHKRNVCPVKGCGKKFFSHKYLVQHRRVHMDDRPLKCPWKGCKMTFKWAWARTEHIRVHTGARPYVCAEPGCGQTFRFVSDFSRHKRKTGHSTKKGR 1202
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 7926930 7932064 + Carg07572-RA Car13g00624 159541

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Car13g00624 1202 MobiDBLite consensus disorder prediction 982 1006 - -
Car13g00624 1202 MobiDBLite consensus disorder prediction 816 844 - -
Car13g00624 1202 MobiDBLite consensus disorder prediction 711 727 - -
Car13g00624 1202 MobiDBLite consensus disorder prediction 785 804 - -
Car13g00624 1202 ProSitePatterns Zinc finger C2H2 type domain signature. 1142 1164 IPR013087 -
Car13g00624 1202 ProSiteProfiles Zinc finger C2H2 type domain profile. 1170 1201 IPR013087 -
Car13g00624 1202 MobiDBLite consensus disorder prediction 862 919 - -
Car13g00624 1202 ProSitePatterns Zinc finger C2H2 type domain signature. 1172 1196 IPR013087 -
Car13g00624 1202 MobiDBLite consensus disorder prediction 982 1079 - -
Car13g00624 1202 ProSiteProfiles Zinc finger C2H2 type domain profile. 1110 1139 IPR013087 -
Car13g00624 1202 MobiDBLite consensus disorder prediction 816 830 - -
Car13g00624 1202 MobiDBLite consensus disorder prediction 1041 1055 - -
Car13g00624 1202 MobiDBLite consensus disorder prediction 862 908 - -
Car13g00624 1202 MobiDBLite consensus disorder prediction 697 727 - -
Car13g00624 1202 MobiDBLite consensus disorder prediction 205 224 - -
Car13g00624 1202 ProSiteProfiles Zinc finger C2H2 type domain profile. 1140 1169 IPR013087 -
Car13g00624 1202 ProSitePatterns Zinc finger C2H2 type domain signature. 1112 1134 IPR013087 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car13g00624 - - - mcha:111008693 1855.11
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Car13g00624 Car18g00201 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car04g01861 Car-Chr4:10777298 Car13g00624 Car-Chr13:7926930 1.16E-11 dispersed
Car04g02479 Car-Chr4:19712116 Car13g00624 Car-Chr13:7926930 2.36E-11 dispersed
Car13g00624 Car-Chr13:7926930 Car04g02480 Car-Chr4:19717088 1.32E-14 dispersed
Car13g00624 Car-Chr13:7926930 Car18g00201 Car-Chr18:1148147 0 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g892 . . . . . . . . . Cmo18g00183 . . . . . Cpe20g00334 . . . . . . . . . . . . . . . Cone2ag0949 Cone16ag0052 . . Lsi02g00464 Csa01g00920 Chy12g01206 Cme12g01627 . . . . Bpe07g00876 . . . Sed08g2466 . . . Cma18g00207 Car13g00624 Car18g00201 Cpe09g00989 . Bhi08g01693 Tan05g2897 Cmetu10g1062 Lac10g0536 Hepe07g2164 . . Cla03g00321 Cam03g0337 Cec03g0329 Cco03g0343 Clacu03g0339 Cmu03g0945 Cre03g0638 . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008005 0 1 1 1 1 1 3 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 2 1 1 36
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
4548 None None None None Car TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Car13g00624 Car_Chr13 FPKM 1.685598 1.829967 2.213708 2.591953 2.894232 3.277453 3.272322 2.979975 2.691493 3.824715