Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car13g00649 ATGGTTTCAACGAGAAGGAGTGGATCTCTCTCTGGAAGCAACAGCAAAAGATCTTCGTCCTCCGAGGATAAGCCATCGTCACCGAAGCGTCAAAAGGTGGAAAATGGCTGTGGCTCAGAGAAATCGATGCCGGCGGTGGAGAATTCTAAAGAATTATGCACCCCGCCGACTGTGGATCCTGGAGATAATGGACCTGGCGGTGGTCCGATCGCCGGAGTTGACGTTGGAGAAGGTGTGAGCTCTTTGAAGGAGGATGCTGCACCAGCGGCTGTTGCTGTTACCACTCCTATCGCCGAGGGAACTTCGCTGGTGGGGGATAAGCCTAGGAGTTCATTTTCATCTTGGAGTCTCTATGCTGCGAAGCAGAATCCAAATTTTGAGACGACAACTCCTTGGTGTAGGCTTCTATCACAGTTCGGTCAGAATCCCAATGTTGATATTTTCTCGTCAAATTTTACCATTGGTTCTAGTAGAGGTTGCAACTTTCCCTTGAAGGATCACACGATTAGCGGGACACTTTGCAAGATCAAGCACACTCAGCGTGAGGGTAGTGCTGTAGCAGTGCTTGAAAGTACGGGAGGCAAGGGATCGGTGATGGTTAATGGGTTGACCGTCAAGAAGAGCTCCAGCTGTGTGCTAAATTCTGGTGACGAAGTGGTCTTTGGTGCTTTGGGGAACCATGCTTATATATTTCAGCAACTTATGAATGAGGTTTCTGTTAAAGGTTTAGATGTTCAAAATGGTGTTGGAAAATTCTTGCAGCTCGGAAAGAGGACTGGTGATCCTTCTGCTGTGGCTGGGGCCTCGATATTGGCATCTCTTTCAAGCCTCAGGCAGGATATATCACGTTGGAAGCCTCCCTCTCAGACCAGCGGTAAAACACACCAAGGTGCTGAACTTCCTTCTAATTCTGTTGTTCATGATGCAATGGAACTTGAAATTGATGCTCTTGAAGCCAACTCAAATCCAGAAGTACGAAATGACAAAGCTGTAGACTCAAGCACCACTAGCAGGAATCTTCATCCGGGCTCCAATCCAGATGCTGTCATAGAGGCAGGCAATGTAAAACTCTCTGGGGTGAATGATTTGATAGGGCCTTTGTTCAGGATGTTAGCTCAGTCAACTAGTTGTAAACTGAAATTGAGCAAAAGTATCTGTAAACAGGTAATGGAAGAAAGAAACCAGTGGATTGGGGAGTTGCAGCCAGCATCAACCTCAGGAATGTCTTTGCGGTGTGCAGCATTTAAAGAAGATGTTCATGCAGGAATTGTTGATGGAAGAGACTTAGAAGTTTCATTTGAGAACTTTCCATACTATTTGAGTGAGAATACGAAGAATGTGCTTATTGCTGCTTCTTACATACACTTGAAGCATAAAGAACATTCAAAGTACGCCTCAGAATTAAATACAGTGAATCCACGAATTCTACTTTCTGGTCCTGCTGGTTCGGAGATATATCAAGAGATGCTAGCGAAGGCACTTGCCAACTACTACGGAGCAAAGCTACTCATATTTGACAGCCATTCATTTTTGGGTGGTTTATCATCAAAGGAAGCAGAGCTGCTGAAGGATGGAGTTAATGCAGCAAAGTCTTGTAGTTGTTCAAAACAGAGTACTGTATCTACTGAGACCACCAAGAACACAGATCAAGTGACTGGTGAAGAAGATACTCCAAGCTCTTCAAATGCTACTTTAACCGCCCCTGATTCCCAACCTAAGATGGAGATGGACTCAATACCATCATCCTCTGGGACAGCAAAGAATAACTTTTTAAAAATTGGTGATAGAGTAAAATTTATAGGTTCAGCTTCTGGTGGGATATATCCAGCAACATCTCCCGCAAGGGGCCCACCCAATGGAACTCGCGGAAAGGTTGTATTAACTTTTGACAACAGCTCTTCATCAAAAATTGGTGTTAAGTTTGATAAACTTATACCTGATGGAGTTGATCTTGGGGGATATTGTGAAGGAGGCTATGGATATTTCTGTTATGCAACCGATCTACGTTTGGAGAACTCTGGCGTGGAAGAATTGGATAAGATTCTTATTGATATTTTATTTGAGGCAGTATTTAGTGAAAGCAGAAATTCTCCTTTCATTTTGTTCATGAAAGATGCTGAGAAGTCTCTTGTTGGAAATTTAGATTCCTATTCTACTTTTAAAAGTAGACTGGAAAAGCTTCCCGACAATGTTATAGTAATTGGCTCTCATACTCATACTGACAACCGCAAGGAGAAGTCGCATCCCGGTGGCTTGCTTTTCACGAAATTTGGCAGCAATCAAACTGCTCTTCTTGACTTGGCATTTCCGGTAATGGATAGTTTTGGAAGACTGCATGATAGAGGGAAGGAAGTTCCAAAAGCAACAAAACTTCTTACTAAACTATTTCCCAACAAAGTTACAATCCACATGCCGCAGGATGAGGGCCTTCTTGTATCATGGAAGCACCAGTTAGAACGAGATGCCGAAACTCTTAAAATGAAGGGAAATCTTAATCAATTGCGCGTTGTTTTGAGTAGGAGTGGAATGGATTGTGAAGGTCTAGAGACATTATGCATCAAGGATCAAACACTTACGAATGAGAGTGCAGAGAAGGTAGTTGGATGGGCCTTAAGCCATCATTTAATGCAGAATCTAGAAGCCGATCCTGATTCTAGAATTCTTTTGTCTTGTGAGAGCATTCAATATGGGATCAGCATCTTACAGGCTATCCTGAATGAGTCTAAATGCATGAAGAAGTCACTCAAGGATGTAGTTACAGAGAATGAATTTGAGAAAAGGCTTCTAGCAGACGTTATCCCACCCAGTGATATAGGAGTAACATTTGATGATATTGGAGCTCTTGAAAATGTGAAGGATACTCTAAAGGAGTTGGTGATGCTTCCTTTACAAAGGCCCGAACTTTTCTGTAAGGGACAATTGACAAAGGCAATAGAAATGATCTCTGAGGTGAGCTTTGTGGTAAAAAGGGGAGAGAATACCAAGCCTCTCGGAGAAATTAAATCTTTTTTCAACGCCTTCCATGTTGCTTGGTTATGTACTGAACAACCTTGTTTGGTGAAAGAATCTCACTTGCTATTATTGTATGTGAAGCCATGCAAAGGTATTCTGTTATTTGGTCCACCTGGAACAGGTAAGACGATGCTCGCAAAAGCTGTGGCTACTGAAGCTGGTGCAAATTTTATCAACATTTCCATGTCAAGCATTACATCAAAGTGGTTTGGTGAGGGTGAGAAGTATGTAAAAGCTGTTTTCTCTCTAGCCAGTAAAATTGCCCCAAGTGTTGTATTTGTTGATGAAGTTGACAGCATGCTGGGTCGAAGAGAAAATCCGGGAGAACATGAAGCCATGCGAAAGATGAAAAATGAATTTATGGTGAACTGGGATGGTTTGCGAACAAAGGACACAGAAAGGGTGCTGGTTCTTGCAGCCACAAACAGACCTTTTGATCTTGATGAAGCTGTTATTCGAAGGCTTCCTCGTAGGTTGATGGTGAATTTGCCAGATGCTCCGAACAGAGCAAAGATACTCAAAGTTATTTTGGCAAAAGAAGATTTGTCTCCAGACTTTGATTTTGATTCGGTTGCTAGTATGACAGATGGATACTCTGGGAGTGACCTTAAGAATCTTTGCGTTGCTGCTGCACACCGTCCAATTAAAGAGATATTGGAAAAGGAGAAAAAGGCAAGTTCTTTTATTATGAGTGAGCTAGAGCGTGCTGCAGCTCTCGCAGATGGCAGGCCTGCTCCTGCCCTTAGTGGAAGTGAAGATATTCGGCCTCTAAATATGAACGACTTCAAATATGCTCATGAACGGGTAACAAGAGACCTCAAACTATAA 3840 42.84 MVSTRRSGSLSGSNSKRSSSSEDKPSSPKRQKVENGCGSEKSMPAVENSKELCTPPTVDPGDNGPGGGPIAGVDVGEGVSSLKEDAAPAAVAVTTPIAEGTSLVGDKPRSSFSSWSLYAAKQNPNFETTTPWCRLLSQFGQNPNVDIFSSNFTIGSSRGCNFPLKDHTISGTLCKIKHTQREGSAVAVLESTGGKGSVMVNGLTVKKSSSCVLNSGDEVVFGALGNHAYIFQQLMNEVSVKGLDVQNGVGKFLQLGKRTGDPSAVAGASILASLSSLRQDISRWKPPSQTSGKTHQGAELPSNSVVHDAMELEIDALEANSNPEVRNDKAVDSSTTSRNLHPGSNPDAVIEAGNVKLSGVNDLIGPLFRMLAQSTSCKLKLSKSICKQVMEERNQWIGELQPASTSGMSLRCAAFKEDVHAGIVDGRDLEVSFENFPYYLSENTKNVLIAASYIHLKHKEHSKYASELNTVNPRILLSGPAGSEIYQEMLAKALANYYGAKLLIFDSHSFLGGLSSKEAELLKDGVNAAKSCSCSKQSTVSTETTKNTDQVTGEEDTPSSSNATLTAPDSQPKMEMDSIPSSSGTAKNNFLKIGDRVKFIGSASGGIYPATSPARGPPNGTRGKVVLTFDNSSSSKIGVKFDKLIPDGVDLGGYCEGGYGYFCYATDLRLENSGVEELDKILIDILFEAVFSESRNSPFILFMKDAEKSLVGNLDSYSTFKSRLEKLPDNVIVIGSHTHTDNRKEKSHPGGLLFTKFGSNQTALLDLAFPVMDSFGRLHDRGKEVPKATKLLTKLFPNKVTIHMPQDEGLLVSWKHQLERDAETLKMKGNLNQLRVVLSRSGMDCEGLETLCIKDQTLTNESAEKVVGWALSHHLMQNLEADPDSRILLSCESIQYGISILQAILNESKCMKKSLKDVVTENEFEKRLLADVIPPSDIGVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKAIEMISEVSFVVKRGENTKPLGEIKSFFNAFHVAWLCTEQPCLVKESHLLLLYVKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSITSKWFGEGEKYVKAVFSLASKIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDTERVLVLAATNRPFDLDEAVIRRLPRRLMVNLPDAPNRAKILKVILAKEDLSPDFDFDSVASMTDGYSGSDLKNLCVAAAHRPIKEILEKEKKASSFIMSELERAAALADGRPAPALSGSEDIRPLNMNDFKYAHERVTRDLKL 1279
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 8043751 8057276 - Carg07599-RA Car13g00649 159566

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Car13g00649 1279 MobiDBLite consensus disorder prediction 282 301 - -
Car13g00649 1279 MobiDBLite consensus disorder prediction 317 347 - -
Car13g00649 1279 Pfam ATPase family associated with various cellular activities (AAA) 1036 1165 IPR003959 GO:0005524|GO:0016887
Car13g00649 1279 MobiDBLite consensus disorder prediction 537 583 - -
Car13g00649 1279 Pfam AAA+ lid domain 1189 1225 IPR041569 -
Car13g00649 1279 SMART AAA_5 1032 1169 IPR003593 -
Car13g00649 1279 MobiDBLite consensus disorder prediction 282 302 - -
Car13g00649 1279 Pfam FHA domain 153 222 IPR000253 GO:0005515
Car13g00649 1279 MobiDBLite consensus disorder prediction 1 21 - -
Car13g00649 1279 MobiDBLite consensus disorder prediction 326 343 - -
Car13g00649 1279 ProSitePatterns AAA-protein family signature. 1139 1158 IPR003960 GO:0005524|GO:0016887
Car13g00649 1279 MobiDBLite consensus disorder prediction 22 36 - -
Car13g00649 1279 MobiDBLite consensus disorder prediction 1 76 - -
Car13g00649 1279 CDD AAA 1020 1167 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car13g00649 - - - csv:101214766 2153.64
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Car13g00649 Car18g00225 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car13g00649 Car-Chr13:8043751 Car17g01042 Car-Chr17:8159879 0 dispersed
Car13g00649 Car-Chr13:8043751 Car18g00225 Car-Chr18:1278709 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g126 . . Bda06g00733 . Bpe12g00487 . . . Cmo13g00832 . . . . . . Cpe20g00310 . . . . . . . . . . . . . . . Cone2ag0968 . . Cone19ag0203 Lsi02g00499 Csa01g00959 . . . Blo15g00077 . . Bpe07g00884 . . . . . . Cma13g00801 . Car13g00649 Car18g00225 . . Bhi08g01473 . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002923 2 8 3 1 2 1 2 1 1 1 1 1 2 1 1 2 1 4 2 1 1 1 2 1 1 1 1 4 2 1 53
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Car13g00649 Car_Chr13 FPKM 0.79972 1.471289 2.926396 2.3613 3.760852 3.061964 4.84434 28.377686 26.812771 26.00033