Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car13g00660 ATGGCGCCATCAACTTCAGGATCATCAAAGAGAGCCAGAGGAGCTCACAGTGGCGCCATTCAGCCAGTTTCTTGCCTTGTCGATGGCTGCAATTCAGATCTAAGCAACTGTAGAGACTACCACAGGCGCCATAAGGTCTGTGAGCTGCATTCCAAGACTCCTCAGGTCACCATCGCTGGCCTCAACCAGAGATTTTGCCAGCAGTGTAGTAGGTTTCATTCACTTGAGGAATTTGACGAAGGAAAGAGAAGCTGCCGGAAACGACTGGACGGCCACAACCGGCGGCGGAGAAAGCCTCAAACTGACCTCTTGCCTCGATCTGCTGGCCATTTGTCCTATCATCAAGGTGCCCATTTGTTGCCATTTACAAGCTCGCAAGTTTTTCCACCGACCACTTTGAGCAGCCACGGGTGGTCGTCTGCAGGAGATCCCTCCGTCTTCCACAACCAGAACCAAGAACTCAATTTTCTCGAAAAACAGAGGCTTTTTGTGGAACCATCCAGCTACAAAGCGGCGCAACCACTGGGGTTCTTGCATGGCGGCCCGACAACATGCCGACCACTTCTCCGGAGTATCAATACCCTGTCGGAAAACACCGGCGGCGAAAGGAACAAGATGGTTTACTACCGGTTCAGAGTTGGAGTTAGTGAATCAGATTGTGCTCTCTCTCTTCTGTCATCGTCACAGCAGGCCGCCGACAGTGGTTCTTCTGGGCATTTGGGTTTGAGCAGAATCGAACAAGAACAGCAACAGCGTAGCGCCGCCATTTCTCTGCTGCAGCCATTGAGCCACCACCACCACCACCATAAACTCGACAGTTTTGAGAATTCTGAGTCCTCTTCGGTTCATGGGGCTGTTAATTTCCCCGAGATCTTCGGAATTCCCTCCGAGAATGCTGGAAATCAATCCCCTTCCACTCTTCCTTTTCACTGGGAGTAA 939 51.54 MAPSTSGSSKRARGAHSGAIQPVSCLVDGCNSDLSNCRDYHRRHKVCELHSKTPQVTIAGLNQRFCQQCSRFHSLEEFDEGKRSCRKRLDGHNRRRRKPQTDLLPRSAGHLSYHQGAHLLPFTSSQVFPPTTLSSHGWSSAGDPSVFHNQNQELNFLEKQRLFVEPSSYKAAQPLGFLHGGPTTCRPLLRSINTLSENTGGERNKMVYYRFRVGVSESDCALSLLSSSQQAADSGSSGHLGLSRIEQEQQQRSAAISLLQPLSHHHHHHKLDSFENSESSSVHGAVNFPEIFGIPSENAGNQSPSTLPFHWE 312
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 8113900 8115975 - Carg07610-RA Car13g00660 159577

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Car13g00660 312 MobiDBLite consensus disorder prediction 293 312 - -
Car13g00660 312 ProSiteProfiles Zinc finger SBP-type profile. 22 99 IPR004333 GO:0003677
Car13g00660 312 MobiDBLite consensus disorder prediction 296 312 - -
Car13g00660 312 Pfam SBP domain 25 98 IPR004333 GO:0003677
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car13g00660 - - - cpep:111802519 462.225
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car08g00154 Car-Chr8:927995 Car13g00660 Car-Chr13:8113900 1.65E-51 dispersed
Car11g01303 Car-Chr11:10804091 Car13g00660 Car-Chr13:8113900 2.86E-47 dispersed
Car13g00660 Car-Chr13:8113900 Car17g01323 Car-Chr17:9901582 7.34E-54 dispersed
Car18g00359 Car-Chr18:2228120 Car13g00660 Car-Chr13:8113900 1.78E-35 dispersed
Car10g00040 Car-Chr10:176209 Car13g00660 Car-Chr13:8113900 1.52E-82 wgd
Car11g00025 Car-Chr11:111811 Car13g00660 Car-Chr13:8113900 6.87E-81 wgd
Car13g00660 Car-Chr13:8113900 Car18g00237 Car-Chr18:1353627 5.76E-144 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g97 . . . Bda15g00631 . . . . . . . . . . . Cpe20g00300 . Bhi02g00671 Tan09g2020 . . . . . . . . . . . . . . . . Lsi02g00513 . Chy12g01157 . . . . . . . . . . . . . . Car13g00660 . Cpe09g00953 . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0011451 0 3 0 0 0 1 2 1 1 1 1 1 2 1 1 2 1 0 2 1 1 1 1 1 1 1 1 1 2 0 31
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
4552 PF03110 SBP 4.90E-31 No_clan Car TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Car13g00660 Car_Chr13 FPKM 0.093431 0.0 3.229486 3.392759 0.264932 0.247723 0.191075 0.625474 0.220863 0.232156