Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car13g00668 ATGCTTTGGTTATACTATGCCTCATTCAAGCCTGATGAAACCCTTCTCATTACTATCAATTCGGTCGGGTGCGTCATTGAGACCGTTTACATTGCCATCTTCGTCGTCTTTGCTCCCAAGCAGATTCGGGTTTCCACGTTGAGATTTGTTCTTCTATTGAACTTTGGTGGGTTTTGCGTAATTCTACTTGTGACTCACCTATTAGTGCAAGGCTCCAACAGAGTGAAGGCTCTTGGATGGATTTGTGTGGCTTTTTCTGTGTGTGTCTTTGCAGCTCCACTTAGCATCATGCTTCCAAACGTGTTGGGATTTATATTTGGGGTAGCACAAATGATCCTGTATTTGATCTACAAGAAGCAAGAGATAGCAATGGCAAAGGAAATGAAGCTACCAGAACACACAACCGAGATTATAATGATAACCGCCGCTGCCGCCGCCGCCGCCGCCGACAAAGAAAAGGAAGATTCTTCTCTACCACCTTCTATTGGAGCCATTGAGGTAATAATAACCAACGGAATCCAACACGACAACAAGATGGAGCTGGACCTTAAAGACAAAGTCAAAGACCAAGTCAAAGACAAAGACAAAAACTTGGAAGTCAACGACCAAATTACAGTTCCTATTGTTGTTTAA 633 43.29 MLWLYYASFKPDETLLITINSVGCVIETVYIAIFVVFAPKQIRVSTLRFVLLLNFGGFCVILLVTHLLVQGSNRVKALGWICVAFSVCVFAAPLSIMLPNVLGFIFGVAQMILYLIYKKQEIAMAKEMKLPEHTTEIIMITAAAAAAAADKEKEDSSLPPSIGAIEVIITNGIQHDNKMELDLKDKVKDQVKDKDKNLEVNDQITVPIVV 210
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 8157622 8159231 - Carg07618-RA Car13g00668 159585

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Car13g00668 210 Pfam Sugar efflux transporter for intercellular exchange 1 41 IPR004316 GO:0016021
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car13g00668 K15382 SLC50A, SWEET; solute carrier family 50 (sugar transporter) - csv:101221861 236.884
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Car10g00030 Car13g00668 CCT
Car11g00015 Car13g00668 CCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car08g00003 Car-Chr8:12762 Car13g00668 Car-Chr13:8157622 8.80E-25 dispersed
Car13g00668 Car-Chr13:8157622 Car17g01304 Car-Chr17:9828302 1.37E-34 dispersed
Car13g00667 Car-Chr13:8151976 Car13g00668 Car-Chr13:8157622 6.50E-17 tandem
Car12g01017 Car-Chr12:10107382 Car13g00668 Car-Chr13:8157622 4.80E-27 transposed
Car10g00029 Car-Chr10:133645 Car13g00668 Car-Chr13:8157622 3.19E-30 wgd
Car11g00014 Car-Chr11:64737 Car13g00668 Car-Chr13:8157622 7.60E-40 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g62 . . . Bda15g00684 Bpe12g00468 . . . Cmo13g00855 Cmo18g00234 . Cma11g00017 Car10g00030 Car11g00015 Sed12g2535 Cpe20g00293 . Bhi02g00653 Tan09g2407 . . Hepe09g0028 . . . . . . . . . . Cone16ag0001 Cone13ag0243 Cone19ag0226 . . Chy12g01148 Cme12g01568 . . . Bda14g01343 . Bpe15g00236 . Bma08g00269 Sed08g2418 Cmo10g00036 Cmo11g00016 Cma13g00824 . Car13g00668 . . Cpe18g00922 Bhi08g01529 Tan05g3000 Cmetu12g1505 Lac10g0605 Hepe07g2090 . . Cla03g00373 Cam03g0393 Cec03g0379 Cco03g0394 Clacu03g0392 Cmu03g0997 Cre03g0689 Lsi06g01663 Csa01g00031 Chy02g02684 Cme02g02090
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001270 2 3 3 3 1 3 2 3 3 2 2 3 4 3 3 5 3 2 3 3 2 2 2 2 1 2 2 4 2 1 76
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Car13g00668 Car_Chr13 FPKM 17.277447 18.045454 14.499669 14.639126 14.399504 14.29345 15.654345 14.261401 14.201147 15.053646