Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car13g00673 ATGCTTTCCAGAGCTGGGAACGTCCTGTGGATGGAAGAAGATAGCAAGGAAGAAGACTCTGCTTCCTGGACCAAAAACAACACCAACACCCATCTCACCCACCCTGCTAATTCCTCTGTTTTCGACAACAACCACCAAATCACCTCTCTCTCTACCTTCAAATCCATGCTCGACGTTGAAGACGACTGGTGCATCAATGACAATGCCCTCCATAACCATACCCACCACGCCGACATCAACGACATTACCTTCTCCCAGAATTTCACCGACCCACCTGACAATTTGTTGCTCCCCTCTGCAGATTCCTCCTCTTCTTGCTCCCCTTCTTCCTCTGTCTTCAATAACATCGACCCATCTCAATTGCGCTTCTTTTTACCCCCAACCCGCACTTTCTCTTCACTCCACAAACCCATTTCTAACAACCCTTTAGACCATCCCTTCGATTTGGGCGCAGAGTTTGGGTTTCTTGACGTCCAAGCTTCAAATTCTTCCACTCTGCTCAATAATGGAGGTGGGTTATTAACTGGGTTCACTGATTTAAGCCCAACTAGTCAAATGAACGCTCCTAATTTGTGCTTAGCCTCTCAATTGACAGAGAATTGTTCGGGTTTAGCTGGATTTCAGAGTTTCGATGACAATTTGGGAAATGCTCTGCTTCTGAATCGGTCTAAGCTTTTGCGACCACTTGAATCCTTTCCCTCAGTGGGAGCTCAGCCGACTCTTTTTCAGAAGAGGGCAGCTCTAAGGAAAAGTTTAGCTGATAAGGGAAGCAATTTGGGGGGTTTGAGCCCCGATGGCGGCTGGTTTTCAAACAGGATTGATGGTGGCGTTGGAAAAACTGAGATGGGCGATGAAAATGGGAAGAAGAGGAAAATGATTTATGCGGATGAGTTTCAAGATACCAGCATCGACACATCCCGTTTCAACTACGATTCTGATGATTTTACCGAGTATAACAACAGTAAGTTGGATGAGAGCGGTAGAAATGTCGGAAATACATCAAATGCCAATAGTACGGTGACCGGCGGCGACCAGAAGGGGAAGAAGAAAGGACTTCCAGCGAAGAATTTGATGGCTGAGAGGCGTCGGAGGAAGAAGCTCAATGATAGGCTCTACATGCTGAGGTCTGTTGTTCCCAAAATTAGCAAAATGGACAGAGCTTCAATTCTTGGGGATGCAATTGAGTACTTGAAGGAACTACTGCAAAGAATCAATGACCTCCATAATGAACTAGAATTTGCTCCTCCCGGGACGGCCTTGACGCCGAGCACAAGCTTTCATCCCTTAACTCCGACTCCGTCGAGCCTCTCGAGTCGTATAAAGGAGGAGCTATGTCCTAGTTCATTTCCCAGCCCAAATGGCCAACAACCTGCAAGGGTCGAAGTTCGGGTACGAGAAGGACGGGCGGTAAATATACACATGTTTTGCAGTCGTCGTCCTGGTCTCTTGCTCTCCACAGTTAGAGCATTAGATAACCTTGGATTAGACATCCAACAAGCTGTGATCAGCTGCTTTAATGGCTTTGCCATGGACATTTTTCGAGCAGAGCAATGCAGCGAAGAGCAGGATGTCCATCCTGAGCAGATAAAAGCAATACTATTAGATTCAGTCGGGTTGAATGGTACGACATAG 1632 46.81 MLSRAGNVLWMEEDSKEEDSASWTKNNTNTHLTHPANSSVFDNNHQITSLSTFKSMLDVEDDWCINDNALHNHTHHADINDITFSQNFTDPPDNLLLPSADSSSSCSPSSSVFNNIDPSQLRFFLPPTRTFSSLHKPISNNPLDHPFDLGAEFGFLDVQASNSSTLLNNGGGLLTGFTDLSPTSQMNAPNLCLASQLTENCSGLAGFQSFDDNLGNALLLNRSKLLRPLESFPSVGAQPTLFQKRAALRKSLADKGSNLGGLSPDGGWFSNRIDGGVGKTEMGDENGKKRKMIYADEFQDTSIDTSRFNYDSDDFTEYNNSKLDESGRNVGNTSNANSTVTGGDQKGKKKGLPAKNLMAERRRRKKLNDRLYMLRSVVPKISKMDRASILGDAIEYLKELLQRINDLHNELEFAPPGTALTPSTSFHPLTPTPSSLSSRIKEELCPSSFPSPNGQQPARVEVRVREGRAVNIHMFCSRRPGLLLSTVRALDNLGLDIQQAVISCFNGFAMDIFRAEQCSEEQDVHPEQIKAILLDSVGLNGTT 543
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 8187877 8190878 + Carg07623-RA Car13g00673 159590
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car13g00673 543 Coils Coil 390 410 - -
Car13g00673 543 Pfam Helix-loop-helix DNA-binding domain 358 400 IPR011598 GO:0046983
Car13g00673 543 MobiDBLite consensus disorder prediction 320 344 - -
Car13g00673 543 MobiDBLite consensus disorder prediction 320 351 - -
Car13g00673 543 MobiDBLite consensus disorder prediction 1 29 - -
Car13g00673 543 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 351 400 IPR011598 GO:0046983
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Car13g00673 Car18g00249 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car11g01271 Car-Chr11:10604990 Car13g00673 Car-Chr13:8187877 8.33E-147 dispersed
Car13g00673 Car-Chr13:8187877 Car14g00695 Car-Chr14:3824074 2.28E-157 dispersed
Car16g01160 Car-Chr16:9904348 Car13g00673 Car-Chr13:8187877 6.07E-20 dispersed
Car13g00673 Car-Chr13:8187877 Car18g00249 Car-Chr18:1454043 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
4553 PF00010 HLH 2.00E-09 No_clan Car TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car13g00673 - - csv:101206422 870.537