Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car13g00686 ATGTCGAGCCCGAAATCATGGAATGAATCAGAGAACCAATGTAATGGTTTAGGCGGGAACTTAGCATCTCTGATAACATATCAAGAGTTTAGCTTTGCACAAAACATGTGCAATGGAACTTTTGGTGGTTGTTGGGTTGGTGGCAGAGTGTTCAACTCTTCAAATAATCTTGTTTGGAAGTGGTCAGATAATGTTTCGAAATGGAACGATTCCATTATTCCCAGAACAGCTTCACAATCTAATTGCAAAAATGTCTCTTGCCGCATGAATGATTTGATTGAAACATGTGCTTTGATAGTTGGTGGACCAGCAGCACCCTTCCTTAGGGATGAGAAATGCAACAGTTCTCACCCTTTTATATGCATGATAAATCTAGATGATAGATGCCAGCGCATGCACTGCCACAAGGAGTATCTAGTTATTCTAGCTGTTGTGAGTGGGTTGATATTTTGCACGACGTTTGCTGTTGTGATTTGGCTTCTTGCCTACAAGAGGAGCAAAAAACGGAGAAGGTCTGGGAAGGTATCCAATCCTGCAGCTTCTGCACTGGTACCACCTTCATGGAAGGTGTTTACTAAAGAAGAGCTAAGATCGATTACAAAAAACTTCAGTGAGGGAAACTGTCTTCTTGGAGACACAAAAACAGGTGGTACATACAGTGGACTCTTACCTGATGGTTCAAGAGTTGCAATTAAAAGATTAAAGAAGTCCAGCTTTCAGAGGAAAAAAGAGTTTCATTCTGAAATTGCAAGAGTTGCTAGACTTCGTCACCCAAATTTGGTTGCCCTGAAAGGATGCTGCTATAACCATGGTGACCGGTACATTGTTTACGAATTCATTATCAATGGACCCTTAGATCAATGGCTACACCATGTACCGAGAGGTGGTCGAAGCTTAGATTGGACCATGAGAATGAAAATTGCCACGACTCTCGCCCAAGGGATTGCGTTCCTTCATGACAAGGTCAAGCCACACGTGGTACATCGAGATATCCGTGCCAGTAATGTACTTCTTGATGAAGAATTTGGAGCACATCTGATGGGAGTTGGCCTATCGAAATTGGTGGCATATGAAGCGATGCATGAGAGGACAGTGATGGCAGGAGGAACCTATGGATACCTTGCTCCTGAATTTGTCTACAGAAATGAGCTAACGACGAAGAGCGATGTCTATAGTTTTGGGGTGCTACTGCTTGAAATTGTGACGGGTCGGAGGCCTACACAGGCAGTTGATTCAGTTGGTTGGCAGAGCATTTTCGAATGGGCAACGCCACTTGTGCAAGCTCACCGTTACCTAGATCTCTTGGATCCTTATATAACGGGCAGTTCTACCTCTGGGATTCCGGAGGGTGGTGTTGTTCAGAAGGTGGTGGACCTTGTGTATGCTTGCACGCAGCATGTCCCATCCATGCGCCCTAGAATGTCGCATGTTGTTCATCAGTTGCAGCAATTGGCCCCTTCACCTCTCACTATGAAGTAA 1479 44.42 MSSPKSWNESENQCNGLGGNLASLITYQEFSFAQNMCNGTFGGCWVGGRVFNSSNNLVWKWSDNVSKWNDSIIPRTASQSNCKNVSCRMNDLIETCALIVGGPAAPFLRDEKCNSSHPFICMINLDDRCQRMHCHKEYLVILAVVSGLIFCTTFAVVIWLLAYKRSKKRRRSGKVSNPAASALVPPSWKVFTKEELRSITKNFSEGNCLLGDTKTGGTYSGLLPDGSRVAIKRLKKSSFQRKKEFHSEIARVARLRHPNLVALKGCCYNHGDRYIVYEFIINGPLDQWLHHVPRGGRSLDWTMRMKIATTLAQGIAFLHDKVKPHVVHRDIRASNVLLDEEFGAHLMGVGLSKLVAYEAMHERTVMAGGTYGYLAPEFVYRNELTTKSDVYSFGVLLLEIVTGRRPTQAVDSVGWQSIFEWATPLVQAHRYLDLLDPYITGSSTSGIPEGGVVQKVVDLVYACTQHVPSMRPRMSHVVHQLQQLAPSPLTMK 492
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 8239898 8242984 + Carg07636-RA Car13g00686 159603
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car13g00686 492 Pfam Protein tyrosine and serine/threonine kinase 225 481 IPR001245 GO:0004672|GO:0006468
Car13g00686 492 ProSiteProfiles Protein kinase domain profile. 204 482 IPR000719 GO:0004672|GO:0005524|GO:0006468
Car13g00686 492 ProSitePatterns Tyrosine protein kinases specific active-site signature. 326 338 IPR008266 GO:0004672|GO:0006468
Car13g00686 492 ProSiteProfiles C-type lectin domain profile. 1 122 IPR001304 -
Car13g00686 492 Pfam Lectin C-type domain 4 122 IPR001304 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car13g00686 Car-Chr13:8239898 Car10g00573 Car-Chr10:2897136 1.02E-63 dispersed
Car13g00686 Car-Chr13:8239898 Car18g00258 Car-Chr18:1492969 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
89283 PF07714 PK_Tyr_Ser-Thr 5.30E-40 CL0016 Car PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car13g00686 - - csv:101218425 915.605