Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car13g00709 ATGGAAATGGGATCATTAGCAACAGGAACAAACCATTATTACAGCCCTTGTGCAGCCTGCAAATTCCTAAGAAGAAAATGCATAGCAGGATGCATATTTGCACCCTATTTCCCACCAGAGGAGCCCCAAAAATTCGCCAATGTCCACAAGGTGTTCGGTGCCAGTAACGTGGCGAAGCTCCTCAATGAAGTTCTTCCTCATCAACGACAAGACGCCGTCGTGTCCCTCGCCTACCAAGCAGAGGCCAGAATCAGAGACCCTGTTTATGGCTGTGTTGCCGCCATTTCCTTCCTTCAAAAACAGGTCCAAAGGCTCCAAAATGAACTCGATGCCGCTAAAGCTCGCCTTTTGCTATACTCTTGCACTGATTTCTCAACCCCCTTTTCGCCTCAGCCTCAGATTATTAGCCCTCCACTGCTTTGGAATCATAATGATATTGTTTCTGCTAATTCTTCTGTGTATTTTAATGGAGGAATTTAA 480 45.83 MEMGSLATGTNHYYSPCAACKFLRRKCIAGCIFAPYFPPEEPQKFANVHKVFGASNVAKLLNEVLPHQRQDAVVSLAYQAEARIRDPVYGCVAAISFLQKQVQRLQNELDAAKARLLLYSCTDFSTPFSPQPQIISPPLLWNHNDIVSANSSVYFNGGI 159
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 8335544 8336023 + Carg07659-RA Car13g00709 159626
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car13g00709 159 PANTHER PROTEIN LATERAL ORGAN BOUNDARIES 10 135 - -
Car13g00709 159 ProSiteProfiles LOB domain profile. 15 116 IPR004883 -
Car13g00709 159 Coils Coil 95 122 - -
Car13g00709 159 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 10 135 - -
Car13g00709 159 Pfam Lateral organ boundaries (LOB) domain 16 113 IPR004883 -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Car11g00069 Car13g00709 CCT
Car10g00093 Car13g00709 CCT
Car11g00069 Car13g00709 ECH
Car10g00093 Car13g00709 ECH
Car13g00709 Car18g00177 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car11g01357 Car-Chr11:11112461 Car13g00709 Car-Chr13:8335544 1.28E-61 dispersed
Car13g00709 Car-Chr13:8335544 Car14g00607 Car-Chr14:3379792 5.46E-60 dispersed
Car10g00093 Car-Chr10:418205 Car13g00709 Car-Chr13:8335544 2.56E-66 wgd
Car11g00069 Car-Chr11:374319 Car13g00709 Car-Chr13:8335544 3.65E-63 wgd
Car13g00709 Car-Chr13:8335544 Car18g00177 Car-Chr18:974033 2.23E-96 wgd
Car13g00709 Car-Chr13:8335544 Car04g02589 Car-Chr4:20334234 4.30E-57 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
4558 PF03195 LOB 8.40E-41 No_clan Car TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car13g00709 - - ahf:112722314 200.675