Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car13g00715 ATGTCATCAACGATGAGGGAAACGTCGAGATTAGCTGAGGCCTCGATCAACGGCATCGTTCGACGAATGGTTAATCTTCCCAGAAGTATATTAGGAGGATTTTCAAGAGTTATGGGTGGAGGTAGAAGAAGCCAGACACTGCCATCCAGTTATCAATATCAGATTCTAGAGCAGGACGTACAAAACGTCCCGGAAGAATGGTCTTTCCTGACCAGTTTCGAGTATCAGTATGGCTCGATGCATCCTTTCTTTTACGCTTGTCGATTTGCAGAAGCTATGAAGATAGCAGAAGATGATCACAAGTTCTTGTTCTTGTATCTACATTCACCAGATCACCCATTTACTCCCTCTTTCTGCGAGGAGACACTGCGTTCAGAGCTAGTAGTGCAGTTTCTTGATGCTAACTTCATCTCTTGGGGAGCACTTGCCAACAGAGGAGATGGCCTACAAATGGCTACAACATTGGGAGCTACCAACTACCCTTTCTGTGCTGTAATTGCTCCAGCTCGGGGCGAAAGCATAACAGTCCTGCAACAGCTTGAAGGGCCAGTTTCTCCAGCTGAACTGGTGGAGATTCTACAGAGGACAATGGAGGAGCAGGGATCAGCTTTTGGTAGCTCCAAACTAAAGCGAGACGAAAAGATAAGAGCCGACCGCAGGCTTCGAGAAGAACAAGACAGAGCATATCATGCAGCTCTTCAAGAAGACAAGGAGAGGGAAAGACTTAAAAATCGACCTCGGGCAATACCGAAGAAAGCACACGAAGAGAGGCTCAAGCAGAATTCTCCAAAGAAACATACTTTTACTCATGAAACTCCAAACAAGGATCCTGCAAGTAAAGCAAAGGATTCTCAGCCTAGCTCCCAGATACTAATAAGGTTTCCAAACGGTGAAAGGAGGGAGAAAAGCTTTTCAAGCATGGACAAGGTGAAGTCGATTTACAGCTATATCGACTCGCTCGGCCTGCCAGGTACTGAAAACTACAGATTGATAGCAAGCTTTCCAAGAAGAGTATACGGTATGGATGAGATGAATATGACACTGAAAGATGCTGGCCTACACCCAAGAGCAAGCCTGTTCCTCGAGCGTCAGTGA 1095 46.03 MSSTMRETSRLAEASINGIVRRMVNLPRSILGGFSRVMGGGRRSQTLPSSYQYQILEQDVQNVPEEWSFLTSFEYQYGSMHPFFYACRFAEAMKIAEDDHKFLFLYLHSPDHPFTPSFCEETLRSELVVQFLDANFISWGALANRGDGLQMATTLGATNYPFCAVIAPARGESITVLQQLEGPVSPAELVEILQRTMEEQGSAFGSSKLKRDEKIRADRRLREEQDRAYHAALQEDKERERLKNRPRAIPKKAHEERLKQNSPKKHTFTHETPNKDPASKAKDSQPSSQILIRFPNGERREKSFSSMDKVKSIYSYIDSLGLPGTENYRLIASFPRRVYGMDEMNMTLKDAGLHPRASLFLERQ 364
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 8359571 8361362 + Carg07665-RA Car13g00715 159632

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Car13g00715 364 Pfam UBX domain 285 362 IPR001012 GO:0005515
Car13g00715 364 MobiDBLite consensus disorder prediction 231 278 - -
Car13g00715 364 MobiDBLite consensus disorder prediction 231 305 - -
Car13g00715 364 ProSiteProfiles UBX domain profile. 283 361 IPR001012 GO:0005515
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car13g00715 K18726 FAF2, UBXD8; FAS-associated factor 2 - csv:101205471 634.409
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car02g00683 Car-Chr2:5083310 Car13g00715 Car-Chr13:8359571 3.02E-77 dispersed
Car04g01891 Car-Chr4:10987722 Car13g00715 Car-Chr13:8359571 7.04E-08 dispersed
Car06g00629 Car-Chr6:3680438 Car13g00715 Car-Chr13:8359571 4.99E-12 dispersed
Car13g00715 Car-Chr13:8359571 Car16g00956 Car-Chr16:7986719 2.51E-13 dispersed
Car13g00715 Car-Chr13:8359571 Car15g01178 Car-Chr15:9200509 8.88E-70 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g788 Blo04g00728 . . . . . . . Cmo13g00906 . . . . . . Cpe20g00253 . . . . . . . . . . . . . . . Cone2ag0920 Cone16ag0087 . . Lsi02g00391 Csa01g00869 Chy12g01253 Cme12g01677 . . . . . Bpe15g00644 . . Sed02g1604 . . Cma13g00873 . Car13g00715 . . . Bhi08g01641 Tan05g1988 Cmetu09g0491 Lac10g0471 . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0013011 0 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 0 1 1 1 0 1 1 1 28
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Car13g00715 Car_Chr13 FPKM 8.673908 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0