Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car13g00716 ATGAACTCCAGATGCCAATTTGGGAACGAGAAGAGGACGCAGAGCGAGCGACCGAGTCGAATGGAGAATCCGAAATTATCAATCTTTCTTGTCAACCTCTTCTGTATTATCAGTCTTTGCATCGCCATCGAATCACCTCAATACGATGTTGTTCATACAGAATCAGACTTCGAAATCAGATTTTACAGGAAGTCCACTTGGATGTCCGCTCCCGTCCAAGACCTATCCTTCGAGAAAGCTACTAAATATGGTTTCCACAGACTGTTCCAGTACATACAAGGTGCCAATCTGAATTGGTCAAGGATTGCCATGACTGCTCCTGTCTTGACAAGCATTGTCCCAGGGACTGGCCCTCTTCACTCGTCCTCTTATCTTGTCCAACTCTATCTGCCGGTTAAGTTTCAAGCCTCACCACCTCTTCCCCTTCCTGAACTGAAACTGAAGCCCTGTGGTTGGGAAGCTCATTGCGTTGCAGTTAGAAAGTTCTCTGGATTTGCAAGGGATGAGAAGGTCATAAGGGAGGCAGAGCAACTCGCCACCAGCTTGAGTAGGTTCCCTTTGGTGAATGCCACCTCTGAAAGGGGTTATGCATATGCCATTGCCCAATACGACTCGCCCTTCCGGTTGATTGGACGAGTTAATGAAGTCTGGGTCGATGTCGATGCAGCCAATTTGGATGGATGTAAATCCAGTGCCATTGCTGCATTCTAA 711 47.4 MNSRCQFGNEKRTQSERPSRMENPKLSIFLVNLFCIISLCIAIESPQYDVVHTESDFEIRFYRKSTWMSAPVQDLSFEKATKYGFHRLFQYIQGANLNWSRIAMTAPVLTSIVPGTGPLHSSSYLVQLYLPVKFQASPPLPLPELKLKPCGWEAHCVAVRKFSGFARDEKVIREAEQLATSLSRFPLVNATSERGYAYAIAQYDSPFRLIGRVNEVWVDVDAANLDGCKSSAIAAF 236
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 8362735 8364649 + Carg07666-RA Car13g00716 159633

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Car13g00716 236 Pfam SOUL heme-binding protein 43 218 IPR006917 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car13g00716 - - - cpep:111782776 457.988
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car13g00716 Car-Chr13:8362735 Car18g00711 Car-Chr18:8325093 3.43E-50 dispersed
Car13g00716 Car-Chr13:8362735 Car06g00417 Car-Chr6:2315228 7.93E-07 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g784 . . Bda06g00608 . . . . . Cmo13g00907 . . . . . . . . . . . . . . . . . . . . . . . . . . Lsi02g00390 Csa01g00868 Chy12g01254 Cme12g01678 . . . . Bpe07g00849 . . . Sed01g1635 . . Cma13g00874 . Car13g00716 . . . Bhi08g01640 Tan05g1989 Cmetu12g1788 Lac10g0470 . . . Cla01g01314 . . Cco01g1476 Clacu01g1380 Cmu01g1290 . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0014295 1 1 1 0 1 0 1 1 1 1 0 0 1 1 1 1 0 1 0 1 1 1 0 1 1 1 0 1 1 1 22
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Car13g00716 Car_Chr13 FPKM 2.511166 4.083255 24.177681 25.259008 48.348179 42.268887 40.662235 41.346771 42.297043 37.573845