Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car13g00717 ATGGACCCCAAGTCGCCTTCGAAACGTAAGCCGTCACCAACGAGATTCTCTAAGCATAAATGGATATTAAACGTAACTGTTATTGTCTTTGTTACAATTGTGATTTCACGTGGTGCAATTCTGGCATTGAAATCTCTAGTTTCTAATGCACCGAAAGAGCTTTATTATACTGTGGTCGTGGACTGTGGAAGCACGGGCACACGAATAGATGTATATGAATGGACGTTGGGGATGAAGGATGGTAATGAATTGCCTGTTTTATTGCGTTCTTTTCCTAACAATTCAACTAAAAGTCCGCTTCGAAAGAAATCTTGTAGTTATCATTGTATGCAAACCCAGCCAGGGTTGGATAAATTTGTTGGCAATATTTCAGCTGTAAGGGCTTCTTTGAAACCATTGATTGAGTGGGCAGAACAGGAGATACCGATTGAAAGGCATGCAATTACTCCTATTTTTGTTTTATCTACTGCTGGACTGAGGAGATTGGCAAATGAGGATGCCGAGCGGGTTTTGGAAGACATCGAGGCTGTTATTAAGGAGCATTCTTTCATGTATCAAAAAAGTTGGATAAGAGTGCTGAGTGGTATAGAAGAAGCTTATTATGGTTGGGTTGCTTTAAATTACAAAATGGGGAGCTTTAGAAACAGTTCAAGGTCAGGCACGTTGGGAATTCTTGATTTGGGTGGTTCCTCGTTGCAGGTTGTGATGGAATCAGACCGTAAAAGGGAAGAAAGGGAAGAAATGCACTTAATGAGATCAAAGGTTGGATCCATTGAGCATCAGGTTTTGGCTTTCTCATGGGAAGCTTTTGGTTTGAATGAGGCATTTGATAGGACTCTTGTTTTGCTCAATCAAACACAGCAACTTGGAGAAAGTAACATGACTACAGTGGAGCTCAGACATCCTTGCCTTAGTTCAAGTTTTATGCAAAAATATACATGCTACAATTGTTTAAGCCATAACAATACGGGCCAGGGGAAATTGAGTCATCAAATCCCCAATCTTGGATATCCTTTTTATTTGGTTGGGAAACCAAATTGGGAGCAGTGCAAACGAATAGCTAGGGCTGCTGCAATCAATTCCAGCACTTTAGCTTGGTCTGAGCCTATCAACGCTTCAAAATGTCTTGCTAGCCCGTCATCTTTGAATGGTGGTAATAATACAGTTGTGCACATTTCCACCACACGTTTCCATGCTCTATCAGGATTCTTTGCAGTCTATCAATCAGTAAATCTGTCTACAAGAGCCAATTGGACAAACATATGGAAAAGAGGCCTGGAGTTATGCTCTGCTTCTCAAGCTGATATGACGCTGAGTATTTCAGGAAACCAAACTAGTTTGTGGCAATATTGTTTCCAGTTACCTTATATGGCATCACTCATTGAGGATGCTCTCTGTCTTGGCGATAAAGAAGTGATTTTTGGTCCTCCGGATGTCTCCTGGACTCTAGGAGCCGCGTTGATAGAGGGAGAGTACTTATGGTCAAGTTCAAGTACAACAACAACAATTGAGAATCACAATTCAACTTTGGGAAAAATTGAGCCTATATATGTATTTATGTTTCTTCTGTGTCTTCTATTGGTTGTTTATTATAATCAAATCAAGCTACCTATGTTAGGCAGAAAGGCAGCAGCGGCTGGGGCATCTCTGCCATCTTATGCCCTTCCAAAACACAGGCCGAACTGA 1686 41.16 MDPKSPSKRKPSPTRFSKHKWILNVTVIVFVTIVISRGAILALKSLVSNAPKELYYTVVVDCGSTGTRIDVYEWTLGMKDGNELPVLLRSFPNNSTKSPLRKKSCSYHCMQTQPGLDKFVGNISAVRASLKPLIEWAEQEIPIERHAITPIFVLSTAGLRRLANEDAERVLEDIEAVIKEHSFMYQKSWIRVLSGIEEAYYGWVALNYKMGSFRNSSRSGTLGILDLGGSSLQVVMESDRKREEREEMHLMRSKVGSIEHQVLAFSWEAFGLNEAFDRTLVLLNQTQQLGESNMTTVELRHPCLSSSFMQKYTCYNCLSHNNTGQGKLSHQIPNLGYPFYLVGKPNWEQCKRIARAAAINSSTLAWSEPINASKCLASPSSLNGGNNTVVHISTTRFHALSGFFAVYQSVNLSTRANWTNIWKRGLELCSASQADMTLSISGNQTSLWQYCFQLPYMASLIEDALCLGDKEVIFGPPDVSWTLGAALIEGEYLWSSSSTTTTIENHNSTLGKIEPIYVFMFLLCLLLVVYYNQIKLPMLGRKAAAAGASLPSYALPKHRPN 561
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 8363754 8365867 - Carg07667-RA Car13g00717 159634

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Car13g00717 561 Pfam GDA1/CD39 (nucleoside phosphatase) family 51 487 IPR000407 GO:0016787
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car13g00717 - - - cmo:103483706 941.799
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car07g01142 Car-Chr7:6862618 Car13g00717 Car-Chr13:8363754 5.25E-20 dispersed
Car09g00963 Car-Chr9:6006495 Car13g00717 Car-Chr13:8363754 1.76E-20 dispersed
Car13g00717 Car-Chr13:8363754 Car16g00450 Car-Chr16:2840467 5.09E-92 dispersed
Car13g00717 Car-Chr13:8363754 Car04g00565 Car-Chr4:3210360 8.62E-93 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g782 . . . . . . . . Cmo13g00908 . . . . . . Cpe20g00252 . . . . . . . . . . . . . . . Cone2ag0919 Cone16ag0088 . . Lsi02g00388 Csa01g00867 Chy12g01255 Cme12g01679 . . . . . . . . . . . Cma13g00875 . Car13g00717 . . . Bhi08g01639 . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0013004 0 1 0 0 0 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 1 1 1 27
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Car13g00717 Car_Chr13 FPKM 0.957143 0.0 2.720993 1.246289 5.486558 2.774928 4.416038 4.978014 4.356113 4.511846