Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car13g00728 ATGGAAGACCCCAAAACCCCAGAAACCCTAAAAGTTCAAAGTCCTGCGATTGAAACTAGCGAGGATATTTCGGGGTTTTCTGGGTTGGCTGATTTGAGTGCGGGATTAACGGCGGAGATTCTGGTAGCTGAAAATGGCGTAGCGGTTAGTGATTGCAGTAACGAGGCTGAGATTAGCAATGTCGAATTGAGGAATGAGGAAGATGAGAAGAGAATAGATGGTTCTGAGAGAGAAATTTTGGATGCTGGTGTGGTTGCAGCAGGTGATGCTGAAGCAGACGGTGGTAATGGTGGTGAGGCTGAGAATGACCAGAAAGAAGGCAACACTGTGGAATTAGATGGTGTGTCTACAGGTGAGAACTCGGAAGTCCCCGGAGATGGTATGCCACTTGCAGTGGACTTCTCGAACGTTCAGCAGGAAGAACCAGAACCTTCCAAGTCGATCGGAACAGAAGAAATGTCGAAAGAAGCTGGAGATGAAAAACAGGTTATTGAAAATGGTCAAGAGCACAAATTTTCGGTTGGTGATGTGATATGGGTCAAGACGAAAAGTCAGACATGGTGGCCTGGGAAGATATATCCTTCGGATGCAGCAGAGAGTGACATAAGTAGCCGGGATGATAGTCTATTAGTTGGCTATTTTGGAAGCAGCCACATGACATGGTGCTCTCCATCTCAGTTGATACCCTTCGCTGATAACTTTGAGCAAATGTCTGGGAAATCCAAGTCTCGAAGCTTCCTCGGAGCCGTAGAGAAAGCCGTGGATGAGTTTGGTAGGTGTGTGAAGTTGGAGATGTCGTGTTCGTGTATTCCAGAACGAAATTACCCTTTAGAAGGTAATGGTGAATCAAAGGATACAACTTCCCTGCGTGGGCGCAAGTCTAGTCTACTTGCTAAATATTCTATTGCTCAGTATGAACCCGAAACATTCCTAGCACGTGTTAAGGGTCTTGCAGAGACTGTTTCCCTATGTGGAGCGTTTGAGTTGAGTATCCTATACAATCAATTAGCAGCTTTTCAAAGCTCAATAGGGCACCAGCAGTTACCTTTGCATCAACTCAGGGAATCTCATGATGATGAAGACAATGAGGTGGGCAAATCAGTGAGAAAAAGCAAAGTTGGTGTTACAGTTGCAGACGAAGAACAGGTAGAAGGGGGCACACAGAGCTCGCCATTAGAGACACCATCTATAGGATCAGATGTTCTGTGCGAAAAGATGGAAGGGAAGAATGAAGATCCTAACAAGGTTCTAGATGGAAGCATGGAAGCTAGGAAAAGGAGCTCCAGAAGAATGGCAATTTCTAATGGAGGAATAGAACCAAAATCTGCAAAGAGAAAAGGACATGAAAAAATTGAAGATTTTGAATCTAGTGAAATGGATTCCTCAATCAAGGGAGAGGTGATCGATCCATTAACAGATGAAATTAAGGATTCTGGTGTAGAAAACTTCGATGATGAGAGCAAAGGAACGTCGGAAAAGAGGTCCGAGACACGAGAGCGGAAGAAGAGCAAGTATTTATCTTTTCCATATATAAACTGGGGGCAGAAAGTTATGCCAGCTGAAACAGATGATATTAGAGCTCTTAAAATTTCTGGCGAAGATGCGGATGAATATGCAGTCGAGGGCCAGAATGAAACCCCATTGCTATCTAAATGCAGTGGCAAGTTCTGGAAGAAGTGGTACCGGAATATCACCAGTGGGAGCGATGTCGCTGATAATCAAGACTTGATGAGTGCATCACCAGCTGAGTTTCTCTCTGAGCTTCATTTTACTGCTGTAGATTGTCTTTATCCAAACGAAATCAGCAACTTTGATGCGGTTGCGCAGTTCTTCTCCAGGTTTAGAATTTTGATGTTTCATGATGAATCTGTCAATGGTGGCCAAAATGAGGCAATGGCTGCCGATTTATTTTTTCTTGGGGGAAAGGTGTCGGAGGTTAAGCATCCTTCCTCGACGCCTAAATCTGGGATCAAGAAAAGAAAAGGTCAGGCAATGAAATCCGAACTAATCTCTGGTGATGTGGGTTTGACTGGACAACCTGATATATGTCCTGCAGGAGATGCACAGAAAAAAAGCCCTCTGACTTCCAATGTCAAGTCAAAAAAAGATGGAGATAGCTTGGGGAAATTGAAGACTAAATCCCTTTCTGCCTTGTCAGATGTGAACATTAACATAGATTCACCAGAGCTCGAACCTCTCTCACCCAATGGAGTATCGAAGCGGAGGAAGCGAAAGAACAATGAATCACATCCCCAGAGTAAACCAACAATGGAGATACCAGATTTAAATGGAAGCGGTACCGTATCTGGCGTGTTGGTGGATAATCGGCAGGCTGTGAGCCATGTCGTCTCCCAACAAAAGTCTGAGCCAAAGAAGAGAAGGAAACTTGGAGCTACTAAGGAGCATTCAAAGGTGTCTACTGAATTCATGGATGTGAATAACAGCAATGAACCTGGTTCGTTTTTCATTGATCTACAGGTCACAGCTCCACAACCACTTGACGTAATTGTAGAGCAAAATAAAGTGGATTTTGCAGGAGCGCCTAACCAGTCGGTGAATTATCAGACAATTGGCCAAGATCAGAGCAAGACTGGGGGCAAAAAGCGAAAGAGGAAGGAGAAGGTTATCTCATCCTCTGATATACCTGATTTAAATCGAATGGGTATTGACATTAGTCAGGGAAAAGATTCCCAATTGACTAAACCTAAGAGGAGGAGGAGGAGGAGAAAAGGTGAAGCTAGTTTGAACCATCCAAATCCTTCTGACAGCAGATCATATATTTATAACAGAGTCGAAACTGATGGTGGAGGCTTAGGATCTCTTCTTCTTTTAACTTTCTCTTCAGAAGCTCCCTTACCTCCCCGGGAGCAAGTTATTAGTACGTTTAGCCAGTTTGGATCATTGAAGGAATCAGAGTTTCAGTTCAAAGATTCTACTGTTGAGATAGTTTTCCTCCGAAGCGCCGACGCCATGGAAGCAGTTCGGAGTTTAAAGAAGAACAACATTTTTGGCCCAACTCTTCTAAAATATCAGCTCTATCATCTCTCGGTTCCCCCCAAGACGTCGGACTCAGACCGGGCTTGCACGGCACTGGCGTATCCAGCTTCTGAGGGCACTCTGAACCCATCAAAATCAGGTGAATTAGGAAATCAAGCAGGTGAGACACCGCCTATAGAGTTTATAAGGAAGAATCTTCAGATGATGACGTCAATGTTGGAGAAGTCAGGAGACAATCTCTCCCCAGACATGAGAGCCAAATTGGAAAGCGATATTGAAGGCCTCCTCAAGAAGGTGAGTTCCATGGCGGGCCCTTCCTCAACGTAA 3324 44.43 MEDPKTPETLKVQSPAIETSEDISGFSGLADLSAGLTAEILVAENGVAVSDCSNEAEISNVELRNEEDEKRIDGSEREILDAGVVAAGDAEADGGNGGEAENDQKEGNTVELDGVSTGENSEVPGDGMPLAVDFSNVQQEEPEPSKSIGTEEMSKEAGDEKQVIENGQEHKFSVGDVIWVKTKSQTWWPGKIYPSDAAESDISSRDDSLLVGYFGSSHMTWCSPSQLIPFADNFEQMSGKSKSRSFLGAVEKAVDEFGRCVKLEMSCSCIPERNYPLEGNGESKDTTSLRGRKSSLLAKYSIAQYEPETFLARVKGLAETVSLCGAFELSILYNQLAAFQSSIGHQQLPLHQLRESHDDEDNEVGKSVRKSKVGVTVADEEQVEGGTQSSPLETPSIGSDVLCEKMEGKNEDPNKVLDGSMEARKRSSRRMAISNGGIEPKSAKRKGHEKIEDFESSEMDSSIKGEVIDPLTDEIKDSGVENFDDESKGTSEKRSETRERKKSKYLSFPYINWGQKVMPAETDDIRALKISGEDADEYAVEGQNETPLLSKCSGKFWKKWYRNITSGSDVADNQDLMSASPAEFLSELHFTAVDCLYPNEISNFDAVAQFFSRFRILMFHDESVNGGQNEAMAADLFFLGGKVSEVKHPSSTPKSGIKKRKGQAMKSELISGDVGLTGQPDICPAGDAQKKSPLTSNVKSKKDGDSLGKLKTKSLSALSDVNINIDSPELEPLSPNGVSKRRKRKNNESHPQSKPTMEIPDLNGSGTVSGVLVDNRQAVSHVVSQQKSEPKKRRKLGATKEHSKVSTEFMDVNNSNEPGSFFIDLQVTAPQPLDVIVEQNKVDFAGAPNQSVNYQTIGQDQSKTGGKKRKRKEKVISSSDIPDLNRMGIDISQGKDSQLTKPKRRRRRRKGEASLNHPNPSDSRSYIYNRVETDGGGLGSLLLLTFSSEAPLPPREQVISTFSQFGSLKESEFQFKDSTVEIVFLRSADAMEAVRSLKKNNIFGPTLLKYQLYHLSVPPKTSDSDRACTALAYPASEGTLNPSKSGELGNQAGETPPIEFIRKNLQMMTSMLEKSGDNLSPDMRAKLESDIEGLLKKVSSMAGPSST 1107
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 8417047 8420370 + Carg07678-RA Car13g00728 159645

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Car13g00728 1107 ProSiteProfiles PWWP domain profile. 174 233 IPR000313 -
Car13g00728 1107 MobiDBLite consensus disorder prediction 853 926 - -
Car13g00728 1107 MobiDBLite consensus disorder prediction 752 785 - -
Car13g00728 1107 MobiDBLite consensus disorder prediction 441 499 - -
Car13g00728 1107 MobiDBLite consensus disorder prediction 374 499 - -
Car13g00728 1107 MobiDBLite consensus disorder prediction 382 396 - -
Car13g00728 1107 MobiDBLite consensus disorder prediction 726 805 - -
Car13g00728 1107 MobiDBLite consensus disorder prediction 404 429 - -
Car13g00728 1107 Pfam PWWP domain 175 256 IPR000313 -
Car13g00728 1107 Coils Coil 58 78 - -
Car13g00728 1107 MobiDBLite consensus disorder prediction 87 124 - -
Car13g00728 1107 MobiDBLite consensus disorder prediction 138 157 - -
Car13g00728 1107 MobiDBLite consensus disorder prediction 786 805 - -
Car13g00728 1107 MobiDBLite consensus disorder prediction 676 708 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car13g00728 - - - mcha:111008692 1592.4
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Car13g00728 Car18g00160 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car12g01033 Car-Chr12:10207836 Car13g00728 Car-Chr13:8417047 1.30E-21 dispersed
Car13g00728 Car-Chr13:8417047 Car14g01134 Car-Chr14:10001597 1.05E-17 dispersed
Car13g00728 Car-Chr13:8417047 Car18g00160 Car-Chr18:869626 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g756 Blo04g00735 . Bda06g00598 . . Bpe13g00240 Bma06g00220 Bma12g01038 Cmo13g00917 . . . . . . Cpe20g00243 . . . . . . . . . . . . . . . . . . . . Csa01g00850 . Cme12g01695 . . Bda11g01653 . Bpe07g00839 Bpe15g00637 Bma03g00782 . . . . Cma13g00888 Cma18g00169 Car13g00728 Car18g00160 Cpe09g01026 . Bhi08g01607 Tan05g2010 . Lac10g0448 . . . Cla01g01299 Cam01g1430 Cec01g1465 . Clacu01g1365 Cmu01g1271 Cre01g1265 . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004937 3 2 2 3 3 1 2 0 1 0 1 1 2 1 1 1 2 0 2 1 1 1 1 1 1 0 2 2 2 1 41
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Car13g00728 Car_Chr13 FPKM 6.933201 8.462436 6.160758 6.597862 5.92817 5.879973 5.724353 13.143851 11.912152 12.095005