Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car13g00729 CTTCCTTCTTATTCACATCCACTTCTTATAAACAGAGGAACTGAAACAGAGGAACAATGGAGTGACTGTGAAGTGAAGTTTTTGTTTGGCTGCTGGAAACATCTTTTTCTTTCTGATCTGTTCTTCATTCATATGGGTTTAACTTCTCTACAAGTCTGTATGGACTCCTCTGATTGGCTGCAGGGCACCATTAACGAGGAGTCTGGCATGGATTCTTCGTCGCTATCAGGGGACATGCTGTCATGTTCAAGGCCGCTGACAGAGAGGAGGCTTAGACCCCCACATGATCAAGCACTGAAATGCCCAAGATGTGACTCAACCCACACCAAATTTTGCTACTACAACAATTACAGCCTCACCCAGCCGCGTTACTTTTGCAAGACATGTCGTAGGTACTGGACCAAAGGCGGCACTCTTCGTAACATCCCTGTCGGTGGTGGCTGTCGAAAGAACAAGAAAGTTGCCACTACTAAGAAATCCAATGACCCACAACACCAACAGCCACAAAATCAACAGCCCATCTCCCAAAATCACCACCAAGGCTCTTCTTCTTCTTCTGCCCATCACATTCACAACCCCACTGATCTCCATCTCTCATTTCCCGACCAAGTACAATTCCCTCATTTCAACCATCTCATTGGAACAACCCCAAGTTTCATGGACGCCAAATACACCATTGGAATGCTTGAAAGTCACCACCAGCATCACACTACTCGACCCATTGATTTCATGGACACCAAAATGGACGCCATTGTTGGGAATGCTCATTACCCTACAAACCCTGATCACTTAGCCATGGTTGGTGGGCTAGCTGGAGATCACATCGCCGCCGCCGCCGCCGCCGCCGGCCATACTCTGTCGCCGAGTTTCCATGGCCTTTGCTCCCCATATGGGCTGTCACTCGATGGGAACACCATAGGACAAGGACTGATGATTCCTTATGATCAGCATGAACCAAATGAGGAGCCAAATGCAATGGATGTGAAACCAAATACAAAGCTTCTGGCTTTGGAATGGCAAGATCAGGGATGTTCAGACAAAGTTGAATCGTATGGATACATAAATGGAATTGGGTCGTCTTGGAATGGGATGATGAATGGATATGGACCATCTACAACGAACCCATTGGTG 1131 47.21 LPSYSHPLLINRGTETEEQWSDCEVKFLFGCWKHLFLSDLFFIHMGLTSLQVCMDSSDWLQGTINEESGMDSSSLSGDMLSCSRPLTERRLRPPHDQALKCPRCDSTHTKFCYYNNYSLTQPRYFCKTCRRYWTKGGTLRNIPVGGGCRKNKKVATTKKSNDPQHQQPQNQQPISQNHHQGSSSSSAHHIHNPTDLHLSFPDQVQFPHFNHLIGTTPSFMDAKYTIGMLESHHQHHTTRPIDFMDTKMDAIVGNAHYPTNPDHLAMVGGLAGDHIAAAAAAAGHTLSPSFHGLCSPYGLSLDGNTIGQGLMIPYDQHEPNEEPNAMDVKPNTKLLALEWQDQGCSDKVESYGYINGIGSSWNGMMNGYGPSTTNPLV 377
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 8422383 8423620 - Carg07679-RA Car13g00729 159646
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car13g00729 377 ProSitePatterns Zinc finger Dof-type signature. 101 137 IPR003851 GO:0003677|GO:0006355
Car13g00729 377 MobiDBLite consensus disorder prediction 144 196 - -
Car13g00729 377 MobiDBLite consensus disorder prediction 160 192 - -
Car13g00729 377 ProSiteProfiles Zinc finger Dof-type profile. 99 153 IPR003851 GO:0003677|GO:0006355
Car13g00729 377 Pfam Dof domain, zinc finger 96 153 IPR003851 GO:0003677|GO:0006355
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Car11g00205 Car13g00729 CCT
Car10g00264 Car13g00729 CCT
Car13g00729 Car18g00159 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car13g00729 Car-Chr13:8422383 Car20g00402 Car-Chr20:2280106 4.27E-36 dispersed
Car16g00033 Car-Chr16:263121 Car13g00729 Car-Chr13:8422383 1.26E-31 dispersed
Car13g00729 Car-Chr13:8422383 Car18g00159 Car-Chr18:866683 1.47E-165 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
4559 PF02701 zf-Dof 4.10E-33 No_clan Car TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car13g00729 - - csv:101223232 514.612